PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_34189-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 575aa    MW: 63971.3 Da    PI: 7.4259
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_34189-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-064565526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     +C+ +   G+C+ G++C++ H+
  TRIUR3_34189-P1 45 ECNMYKM-GFCPNGPNCRYKHV 65
                     6666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.5961439IPR000571Zinc finger, CCCH-type
SMARTSM003560.00461440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0654067IPR000571Zinc finger, CCCH-type
SMARTSM003560.00314266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-44664IPR000571Zinc finger, CCCH-type
PfamPF041464.6E-37184311IPR007275YTH domain
PROSITE profilePS5088246.667184312IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MKGEACGFLH QFDKARMPVC RFFRDYGECR EPDCAYKHSY DDVKECNMYK MGFCPNGPNC  60
RYKHVKLPGP PPPVEEVLAK ILQMRSSNFN KFNQHRNNNY NQQGDRPRPP PGSGLPNQNS  120
TDNASTMQPA AGQQAQTMNQ QPQQKQQQVQ QQQKPNTNDQ VQGVPNGSSN QPTRLATPLP  180
QGSSRYFIVK SCNRENLEIS VQQGIWATQR SNEAKLNEAF ESMDNVILIF SINRTRNFQG  240
CAKMTSRIGG YIGGGNWKSA NGTAHYGRNF SLQWLKKTHH LRNPYNDNLP VKISRDCQEL  300
EPFIGEQLAS LLYLEPDSEL TAMLVAAEAK REEEKAKGVS ADEAADNQDI VLFEDNEEEE  360
EEESEEEDEN NGQESQGRGR GRGMMWPPQM QMPRGPMMGP RGFPPNMMGD FGGGFGFGMP  420
DPFGMPRGFP PFGGPRFPGD FPRGPMPGMV FPGRPPQPGG MFPMGLEMMM GPGRGPLMGM  480
GGPGRPNRPI GMAPFMPPPP PRPVKRDQRR PGGDNRGDRY ETGSDQGSRG HDNNAGNSGA  540
DGNRSQSGDR FGRSAFRDDD SESDEEAAPR RSRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A3e-94169339217930-kDa cleavage and polyadenylation specificity factor 30
5zuu_B3e-94169339217930-kDa cleavage and polyadenylation specificity factor 30
5zuu_C3e-94169339217930-kDa cleavage and polyadenylation specificity factor 30
5zuu_D3e-94169339217930-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1503509VKRDQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3655420.0AK365542.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157107.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A446XUG60.0A0A446XUG6_TRITD; Uncharacterized protein
TrEMBLM8AQQ30.0M8AQQ3_TRIUA; Zinc finger CCCH domain-containing protein 45
STRINGTRIUR3_34189-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428