PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_32420-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 170aa MW: 19780.1 Da PI: 10.2378 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 4 | 63 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g TRIUR3_32420-P1 4 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 63 789******************544454478446*************************98 PP | |||||||
2 | AP2 | 48.9 | 1.6e-15 | 108 | 157 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g TRIUR3_32420-P1 108 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 157 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.96E-18 | 4 | 73 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-17 | 4 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.729 | 5 | 71 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 5 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 5 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-28 | 5 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 6 | 17 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-18 | 106 | 167 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.09E-22 | 106 | 167 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-19 | 107 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 107 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-30 | 107 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-10 | 108 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 147 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA ARAYDLAALK 60 YWGPATHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG VTRHHQHGRW 120 QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLSA VTNFDISKYD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685115 | 0.0 | AY685115.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D14 (AP2D14) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186422.1 | 1e-122 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q1PFE1 | 1e-113 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q6PQQ3 | 1e-113 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | T1NNU0 | 1e-124 | T1NNU0_TRIUA; Uncharacterized protein | ||||
STRING | Traes_4DL_6598DAF2E.1 | 1e-124 | (Triticum aestivum) | ||||
STRING | TRIUR3_32420-P1 | 1e-124 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-111 | AP2 family protein |
Publications ? help Back to Top | |||
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