PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31982-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 1001aa    MW: 110129 Da    PI: 7.5169
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31982-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.17.8e-4162139178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C+adl++ak+yhrrhkvCe+hsk+++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  TRIUR3_31982-P1  62 MCQVDDCRADLTSAKDYHRRHKVCEIHSKTTKAVVGNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 139
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-3456124IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.1260137IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-3861140IPR004333Transcription factor, SBP-box
PfamPF031107.7E-3063136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    Send to blast
MAMDVSPTTT LSSSPSPPAR ASQEQAARPS KRVRSGSPGT ASGGGGGGGG GGSASGGGSY  60
PMCQVDDCRA DLTSAKDYHR RHKVCEIHSK TTKAVVGNQM QRFCQQCSRF HPLSEFDEGK  120
RSCRRRLAGH NRRRRKTQPT DVASQLLLPE NQENAANRTQ DIVNLITVIA RLQGGNVGKL  180
PSIPPIPDKD NLVQIISKIN SINNANSLAK SPPSEAIDLN ASQGQQQDSS VQNATKVVDK  240
QTVPSTMDLL TVLSGALGTS TPETNTSQSQ GSSDSSGNNK SKSHSTEPTC VVNSHEKSIR  300
PFPAAGMLRS SSTHGSPPEV YKQPDRDTHP YLSLQLFGNN EDIPVKMDTA NKYLSSESSN  360
PMDERSPSSS PPVTHTFFPT RSVNEGIRHP RIADYGEDGA TVENSTTRAW CAPPLELFKD  420
SERPTENGSP PNPTYQSCYA STSGSDHSPS TSNSDGQDRT GKIIFKLFGK EPGSIPGNLR  480
DEVVNWLKHS PTEMEGYIRP GCLVLSMYLS MPTIAWDELE ENFLQRVNSL VQASDLDFWR  540
KGRFLVRSDN QLVSYKDGMT RLSKSWRTWN TPELTLVTPI AVVGGRKTSL VLKGRNLTIP  600
GTQIHCTSAG KYISKEVLCS AYPGTIYDDS GVETFDLPGE PSLTLGRCFI EVENRFRGNS  660
FPVIFANKSI CQELRNLEDE LEDSRFPDVS PDDQVHDARR LKPRDQVLHF LNELGWLFQK  720
AAACTPSTKS DVSHSELIQF STARFRHLLL FSNERDWCSL TKTLLEILTK RSMVSDELSH  780
ETLEMLSEIH LLNRAVKRKS SHMVHLLVQF VVICPDNSKL YPFLPNYPGP GGLTPLHLAA  840
SIDDAEDIVD ALTDDPQQIG LSCWHSVLDD EGLSPEVYAT FRNNGSYNEL VTRKLMDRKN  900
SQVTIVLNKG EIHIDQPGNV GANNASGIQA LEIRSCNQCA ILESGLLRRP MRSRGLLARP  960
YIHSMLAIAA VCVCVCVFMR ALLRFNSGRS FKWERLDFGP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3254136284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14152SGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478790.0KF447879.1 Triticum aestivum squamosa promoter-binding-like protein 15 (SPL15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179484.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLM7YXS60.0M7YXS6_TRIUA; Squamosa promoter-binding-like protein 15
STRINGTRIUR3_31982-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein