PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_30765-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 22169.7 Da PI: 4.7343 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ +F+++ + H+++H TRIUR3_30765-P1 176 YTCKICNATFNTSQAYGGHMSSH 198 9*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.6E-4 | 171 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.15E-5 | 172 | 202 | No hit | No description |
Pfam | PF13912 | 1.7E-7 | 176 | 200 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 176 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
PNISPLHEAL RGTTAMPVLN DFVDLESPSS YSPSIGNSST NMYAPQEGTV MPVNDSSMIP 60 YQSSAELAPL PPQLGDTIPI PLSSDEKGMF SHEGFLTNPF WNEFNSSHQM QNLSTEASPF 120 TPLLQTEPNS IVHSQLYTNG VLDDGSLFKM ATRDVSEVSS LPSSAIMQDS TTPRKYTCKI 180 CNATFNTSQA YGGHMSSHSK ARMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | T1NJC4 | 1e-148 | T1NJC4_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_30765-P1 | 1e-149 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11492 | 6 | 12 |