PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29908-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 221aa    MW: 24043.6 Da    PI: 6.9633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29908-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.2e-164995455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      h ++ErrRR++iN++f eL +++P++     kK++Ka+iL  Av+Y+++Lq
  TRIUR3_29908-P1 49 DHIIAERRRREKINQRFIELSTVIPNL-----KKMDKATILGDAVKYVRELQ 95
                     5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0444594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-2049108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1850107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-135099No hitNo description
PfamPF000101.9E-135095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-1751100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDDFMQWAMN TLDQQQYPAA AAAAAPPVYG GAGSSSGGSS AASPGPVQDH IIAERRRREK  60
INQRFIELST VIPNLKKMDK ATILGDAVKY VRELQDKVKT MEDDDSAAAT TTTTIRSAVL  120
VSKKIKAAAD DEEDEGALLG GRPEIEVRVS DEKTVLVRIH CKNARGLLVR VLAEVEDLRL  180
AITHTSVMPF PADTAIITIT AKASTQLTKF LLIFPYLHKL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1549104863Transcription factor MYC2
5gnj_B2e-1549104863Transcription factor MYC2
5gnj_E2e-1549104863Transcription factor MYC2
5gnj_F2e-1549104863Transcription factor MYC2
5gnj_G2e-1549104863Transcription factor MYC2
5gnj_I2e-1549104863Transcription factor MYC2
5gnj_M2e-1549104863Transcription factor MYC2
5gnj_N2e-1549104863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358ERRRRE
25459RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536591e-175AK353659.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001O03.
GenBankAK3643451e-175AK364345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2024A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190431.15e-88transcription factor NAI1-like
RefseqXP_020190432.15e-88transcription factor NAI1-like
TrEMBLM7ZWQ31e-160M7ZWQ3_TRIUA; Transcription factor bHLH25
STRINGTRIUR3_29908-P11e-161(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-30bHLH family protein