PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28596-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YA
Protein Properties Length: 312aa    MW: 34547 Da    PI: 9.7513
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28596-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.92.5e-31147203158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d+p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hA+rR+RgsgGrF
  TRIUR3_28596-P1 147 DAPIYVNAKQYEGILRRRRARAKAEKENRL-VKARKPYLHESRHLHAMRRARGSGGRF 203
                      68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.8E-35145206IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.01146206IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-28149203IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-23149171IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860151171IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-23180203IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAMATRRLRT TCWTRRWTTL TPQHKTTMSM SPPEDACRDG QFQVVPRAQA LLDAVPLPPQ  60
PMGERGIPEA LKFSMAHGKG GNSSEHSAPI TLQSPFTEYN DHFELGLGQS VISSNYYSDQ  120
QYGLLSSYGM RSASSGRMLI PLNMPADAPI YVNAKQYEGI LRRRRARAKA EKENRLVKAR  180
KPYLHESRHL HAMRRARGSG GRFLNTKKET NGKDTGVGSK AMVGNPLMRS AASLSSEIQH  240
SEQGNPSSVS SMSGSEVTSL YDHEDVDHYH NFEHLRTHFF TPLPSIMDGE HGAGNPFKWA  300
AASDGCCNLL KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-18147211266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787560.0KM078756.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188697.10.0nuclear transcription factor Y subunit A-2-like
RefseqXP_020188698.10.0nuclear transcription factor Y subunit A-2-like
RefseqXP_020188699.10.0nuclear transcription factor Y subunit A-2-like
RefseqXP_020188700.10.0nuclear transcription factor Y subunit A-2-like
RefseqXP_020188701.10.0nuclear transcription factor Y subunit A-2-like
TrEMBLM8A7170.0M8A717_TRIUA; Nuclear transcription factor Y subunit A-2
STRINGTRIUR3_28596-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.13e-29nuclear factor Y, subunit A2