PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28560-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 157aa MW: 17305.6 Da PI: 5.2141 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.8 | 1e-09 | 69 | 98 | 2 | 31 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas 31 rr+h ++Er+RR+++N+ ++ Lr+ +P+++ TRIUR3_28560-P1 69 RRNHIAVERNRRRQMNDYLAVLRSSMPPSY 98 999************************973 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.36E-8 | 67 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.785 | 67 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-8 | 68 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.68E-7 | 69 | 101 | No hit | No description |
Pfam | PF00010 | 3.9E-7 | 69 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MALEAVVFPH EHLACSTDKV AAAMSMYAPS LGRGISIVDE FEEKGGVVLQ EEAANYAWAA 60 AVEGNWDERR NHIAVERNRR RQMNDYLAVL RSSMPPSYAQ RCLGLTVLHL NATATADHLV 120 FYSFSLRMED ECRLSTVDEI AAAVHQMVAE VHAGGPC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 79 | RNHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688739.1 | 8e-53 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH57-like | ||||
TrEMBL | A0A446VP56 | 1e-113 | A0A446VP56_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZT48 | 1e-113 | M7ZT48_TRIUA; Transcription factor bHLH96 | ||||
STRING | TRIUR3_28560-P1 | 1e-113 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 5e-13 | bHLH family protein |