PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_28150-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 750aa MW: 80173.2 Da PI: 6.9214 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.4 | 6.4e-12 | 365 | 421 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g rk + g ++ +++Aa+a++ a++k++g TRIUR3_28150-P1 365 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDNEDKAARAYDLAALKYWG 421 78*******************88888885446666.6699989*************98 PP | |||||||
2 | AP2 | 46.5 | 8.9e-15 | 464 | 515 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g TRIUR3_28150-P1 464 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 515 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.57E-17 | 365 | 429 | No hit | No description |
Pfam | PF00847 | 1.7E-8 | 365 | 421 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-14 | 365 | 431 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-21 | 366 | 435 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.293 | 366 | 429 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-12 | 366 | 430 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 367 | 378 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-10 | 464 | 515 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 464 | 524 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.08E-24 | 464 | 525 | No hit | No description |
SMART | SM00380 | 6.6E-33 | 465 | 529 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 465 | 523 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 465 | 523 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 505 | 525 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MASGGNWLGF SLSPHMAMEV PSSSEPDHAQ PASASAMSAS PTNAATCNLL FSQPAQMAAP 60 PPGYYYVGGA YGDGTSTAGV YYSHHPVMPI TSDGSLCIME GLLTVALLSL LLVPVVANAD 120 INLSCCHHVG MMPSSSPKLE DFLGGGNGSG HDAVTYYSHQ QQDQQDQEAS RIYHHHQQQQ 180 QQLAPYNFQH LTEAEAIYQE ATAPMDEAMA AAKNQLVTSY GSCYSNAGMQ PLSLSMSPRS 240 QSSSCHLTEA EAIYQEATAP MDEAMAAAKN QLVTSYGSCY SNAGMQPLSL SMSPRSQSSS 300 CVSAAPQQHQ MAAAAAAASL AASQGGSNGG GEQEQCVGKK RGTGKGGQKQ PVHRKSIDTF 360 GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK DGQTRKGRQG GYDNEDKAAR AYDLAALKYW 420 GPSTNTNFPL ENYREEVEEM KSMTRQEFVA HLRRRSSGFS RGASIYRGVT RHHQHGRWQA 480 RIGRVAGNKD LYLGTFTTQE EAAEAYDVAA IKFRGLNAVT NFDITRYDVD KIMESSSLLP 540 GDEARKVKAV EAANHVPAMH NGGGEISHSE EGSSGVWRMV LHGTPQQAAQ CTPEVADLQK 600 GFMGGGDPRS SLHGIAGFDV ESAAHDIDVS GKINYSNSSS LVTSLSNSRE GSPERFSLPS 660 LYAKHPNAVS VASMSPWMAM PAPAAAPALR GPNSSMPVFA AWTPSLYAKH PTAVSVASMS 720 PWMAMPAPAA AHVLRGPNSS MPVFAAWTDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB458519 | 0.0 | AB458519.1 Triticum aestivum WANT1-2 mRNA for AP2 transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159300.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q84Z02 | 1e-136 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | M7ZPY9 | 0.0 | M7ZPY9_TRIUA; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | TRIUR3_28150-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-107 | AP2 family protein |
Publications ? help Back to Top | |||
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