PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27771-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 360aa    MW: 39156.6 Da    PI: 8.4935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27771-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.19.9e-3319749142
             GRAS  49 Laarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegp 139
                      ++arl++s+ +ly+ lp  +++  +    s+++aa+++f+ +sP++kfsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gp
  TRIUR3_27771-P1   1 MSARLVSSCLGLYAPLPNASSPAASrlvNSRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGP 94 
                      5799***********976666655567788899999********************************************************** PP

             GRAS 140 psl 142
                      p++
  TRIUR3_27771-P1  95 PRF 97 
                      *85 PP
2GRAS1832e-5697286178374
             GRAS 178 fnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      f + va +  +l++e+L v++  +Ea+aV++ +  h+l+d +++ ++    +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalfd
  TRIUR3_27771-P1  97 FYP-VAGKAGNLDPEKLGVDTrrREAVAVHWLH--HSLYDVTGNDSN----TLNLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFD 182
                      556.5778899******998888*********9..999988888888....**********************.899***************** PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                      sl+a+++++s+er++vE++ll+rei+nv+a  g +r+ + + +++Wre+l ++GF++++l  +aa+qa+lll +++sdgy++ ee+g+l lgWk
  TRIUR3_27771-P1 183 SLDASYSEDSSERHVVEQQLLAREIRNVLAVGGPARTGDIK-FGNWREKLAQSGFRAASLAGSAAAQASLLLGMFPSDGYTLVEENGTLKLGWK 275
                      ***********************************999987.**************************************************** PP

             GRAS 364 drpLvsvSaWr 374
                      d  L+++SaWr
  TRIUR3_27771-P1 276 DLCLLTASAWR 286
                      **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2511266IPR005202Transcription factor GRAS
PfamPF035147.1E-5497286IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSARLVSSCL GLYAPLPNAS SPAASRLVNS RVAAAFQVFN GISPFVKFSH FTANQAIQEA  60
FEREDRVHIV DLDIMQGLQW PGLFHILASR PGGPPRFYPV AGKAGNLDPE KLGVDTRRRE  120
AVAVHWLHHS LYDVTGNDSN TLNLIQRLAP KVVTMVEQDL SHSGSFLARF VEAIHYYSAL  180
FDSLDASYSE DSSERHVVEQ QLLAREIRNV LAVGGPARTG DIKFGNWREK LAQSGFRAAS  240
LAGSAAAQAS LLLGMFPSDG YTLVEENGTL KLGWKDLCLL TASAWRPFQA LGAGAVGIPG  300
GVAGGQRRRA GFAAARHVPL RWLHSRRGEW HSEAWMEGSL LAHCICLAPI SGLRPLDLQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-153128767380Protein SCARECROW
5b3h_A1e-153128766379Protein SCARECROW
5b3h_D1e-153128766379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650590.0AK365059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2030J22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178107.10.0protein SCARECROW 2-like
SwissprotQ2RB591e-178SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLM7ZUB80.0M7ZUB8_TRIUA; Uncharacterized protein
STRINGTRIUR3_27771-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-136GRAS family protein