PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_27732-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YA | ||||||||
Protein Properties | Length: 193aa MW: 20937.7 Da PI: 10.1457 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.2 | 4.3e-31 | 76 | 132 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh+hA+rR+Rg+gGrF TRIUR3_27732-P1 76 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGTGGRF 132 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.1E-34 | 74 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.172 | 75 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.4E-28 | 78 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.8E-24 | 78 | 100 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.8E-24 | 109 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEHSATIALQ SPLPEYNSRF EFGPGPSMFS VANLPDVFQM SSGYPSAEQC YGLLTTYAMK 60 STPGGRLLLP LNATADAPIY VNAKQYEGIL RRRRARAKVE RENQLVKGRK PYLHESRHRH 120 AMRRARGTGG RFLNTKKEGN GKDAGGGGKR AEQIILGSTA LGCPSTSHYL FPENSGAGSQ 180 GSCDDGAPHM PVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-19 | 76 | 140 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 125 | RHRHAMRRAR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009063 | 0.0 | BT009063.1 Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182505.1 | 5e-78 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_020182506.1 | 5e-78 | nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_020182507.1 | 5e-78 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | M7Z760 | 1e-140 | M7Z760_TRIUA; Nuclear transcription factor Y subunit A-1 | ||||
STRING | TRIUR3_27732-P1 | 1e-141 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 5e-24 | nuclear factor Y, subunit A10 |