PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27052-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 413aa    MW: 47308.6 Da    PI: 4.4036
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27052-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.63.1e-22182241261
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 
                      Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkhsnf+SFvRQLn+Y+
  TRIUR3_27052-P1 182 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHLFAAMLLPRFFKHSNFSSFVRQLNTYQ 241
                      9**********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030792.3E-12344IPR004313Acireductone dioxygenase ARD family
SuperFamilySSF511826.38E-7544IPR011051RmlC-like cupin domain
Gene3DG3DSA:2.60.120.103.3E-16644IPR014710RmlC-like jelly roll fold
Gene3DG3DSA:1.10.10.101.8E-24175241IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.58E-22178257IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-26178277IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-20182257IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-12182205IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-12220232IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-12233245IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010309Molecular Functionacireductone dioxygenase [iron(II)-requiring] activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MENEFQDICD VCPEKLPNYE AKLKNFFEEH LHTDEEIRYC LEGSDGHRGI WPGGYYPNPS  60
EPIDVCLFGI VIMLLLGPGL ELLEELSCFI DAELAALTID NVDALHDVYT VLLHVNVLQV  120
PTEIAGCLLA RPRGGMDRVL LPVRVKEEWP PPPPEEEEEE LEHRGLAPRP MEGLHETGPP  180
PFLTKTFDLV ADPATDGVVS WGRAGNSFVV WDPHLFAAML LPRFFKHSNF SSFVRQLNTY  240
QQALGSCLEV GQFGFDEEIE VLKRDKNALL AEVVKLRQEQ QSSRADMRAM EERLHHVEQK  300
QLQMMGFLAR AIQNPDFFLQ LIQQQNKLKD LEDGYPTKRR RPIDDREFSE LENLAMNIQG  360
IRKGMEDDRG GRNQGCGEAE LTDDFWEELL SEGMRDEAEM LELERRRSRC FDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-161802401878Heat shock factor protein 1
5hdg_A5e-16180240868Heat shock factor protein 1
5hdn_A5e-16180240868Heat shock factor protein 1
5hdn_B5e-16180240868Heat shock factor protein 1
5hdn_C5e-16180240868Heat shock factor protein 1
5hdn_D5e-16180240868Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0611931e-169KF061193.1 Triticum aestivum heat shock factor HsfA2d (HSFA2d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178141.11e-159heat stress transcription factor A-2d-like
SwissprotQ8H7Y61e-123HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLM7ZMR90.0M7ZMR9_TRIUA; Heat stress transcription factor A-2d
STRINGTRIUR3_27052-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-67heat shock transcription factor A6B