PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25641-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 354aa    MW: 39368.3 Da    PI: 10.7781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25641-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15262345186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f k  ++s++lk+  + +  +f++++g+ +++  t++l+++     rsW v +++ ++  +y+ +kGWk+F+++n+++egD ++Fk+++
  TRIUR3_25641-P1 262 FTK-QITSSSLKRF-FAVKGTFCSSIGLLEAC--TIQLKTSMEgsaRSWPVAFNIANTY-GYITGKGWKRFCRDNDVEEGDRCTFKVVE 345
                      444.4589999998.999**********9988..566666444468*******654443.699***********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-18259353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16259353IPR015300DNA-binding pseudobarrel domain
CDDcd100176.00E-10260342No hitNo description
SMARTSM010191.1E-6262354IPR003340B3 DNA binding domain
PfamPF023627.2E-12263345IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096292354IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MRRRFGSPHW NCSYLGNSNR QPSHPTPPVS SSNHHVTVCT STELNRSDQP KQRIHCDSTV  60
TTSPAEHGAL RPPPTTVQVR RAGAVAKLPP EAGVTSKTRP RFIKLLRPDD REKMTIPDEF  120
VQQHLIGLRV AQPKSLDHWP YRQVMASRAR SASIGRAVFL PNGCMKEYPY LADEADGANT  180
AIPQTGVPAI SIRIEMIHFI RKTGPQNITM PGAKQLVAAT VSKKRNYNRQ VVSAILAPVP  240
AIKAKTVESQ SKPTGILRRH SFTKQITSSS LKRFFAVKGT FCSSIGLLEA CTIQLKTSME  300
GSARSWPVAF NIANTYGYIT GKGWKRFCRD NDVEEGDRCT FKVVEKMVWH VVIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194548.11e-117putative B3 domain-containing protein Os06g0632500
TrEMBLT1N5E80.0T1N5E8_TRIUA; Uncharacterized protein
STRINGTRIUR3_25641-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187