PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24851-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 568aa    MW: 63912.4 Da    PI: 10.0982
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24851-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-12281329155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      r +r++lg+f   + Aa+a++ a+++++g
  TRIUR3_24851-P1 281 SRFKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 329
                      6899**9788.8*********......44*************************98 PP
2B390.41.4e-28395490187
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++++L +gD+++F+ +
  TRIUR3_24851-P1 395 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKDLAAGDSIMFSCS 488
                      89*************************99877766444458999***********************************************965 PP

                      SS CS
               B3  86 gr 87 
                        
  TRIUR3_24851-P1 489 AY 490
                      43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-16281338IPR016177DNA-binding domain
CDDcd000186.02E-23281337No hitNo description
PfamPF008474.2E-7281329IPR001471AP2/ERF domain
SMARTSM003801.4E-22282343IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-19282337IPR001471AP2/ERF domain
PROSITE profilePS5103220.863282337IPR001471AP2/ERF domain
PRINTSPR003675.1E-6283294IPR001471AP2/ERF domain
PRINTSPR003675.1E-6319339IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.0E-37390504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-28392500IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-26393485No hitNo description
SMARTSM010197.6E-21395503IPR003340B3 DNA binding domain
PfamPF023622.7E-26395490IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239395504IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MAHANRWPHT QITDSSDFDD EHHEGNMQDL RRLCSPQTTT ECLSSLPPGL AQPHLRLQNN  60
QATHGRAPRT RREDPTTKAR AATEAPLDAV IVAIQKSVPP KQPPQQTTRR RYRQPPRRRC  120
RQPLVSSCSR LQDDAPKEEE DVKAPSSPDP ADQRQIICVE KEQLSNKIIS KALRPIYQTD  180
DVCKPTCGWR VRRIIVSTTH QNSSPILDIG ARIFLDLFQT FQRCSFNGSR HFRQLRDAYD  240
DFVNLKMLCQ HSLSKVLIRL GFVIADESVT SRSTSAQLAS SRFKGVVPQP NGRWGAQIYE  300
RHARVWLGTF PDQDLAARAY DVAALRYRGR DAATNFPCAA AEAELAFLAA HSKAEIVDML  360
RKHTYADELR QGLRRGRGMG VRAQPTPSWA REPLFEKAVT PSDVGKLNRL VVPKQHAEKH  420
FPLKRTPETT TTTGNGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKDLAAG  480
DSIMFSCSAY GQEKQFFIDC KKNTTVDGGK SASPLPVVET AKGEQIRVVR LFGVDIAGVK  540
RGRAATAEQG PPELFQRQCV THGRHSPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-4539250711121DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-131Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLT1N3890.0T1N389_TRIUA; Uncharacterized protein
STRINGTRIUR3_24851-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-96related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]