PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24374-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25904.5 Da    PI: 8.2023
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24374-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73.1e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     kri+nk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+s+
  TRIUR3_24374-P1  9 KRIDNKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSARGRLFEFST 59
                     79***********************************************96 PP
2K-box738.6e-258518313100
            K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...........ekelqeenkaLr 95 
                      ++ s +qe+ kLk ++e Lq++qR+llGedL++L++keL+qLe+q+e slk+iR++K++  l+q+ el++k           e++lq+ nk+Lr
  TRIUR3_24374-P1  85 TELSNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLNMKELEQLENQIEISLKHIRATKSQQSLDQLFELKRKvthvtllfslqEQQLQDVNKDLR 178
                      3456789***************************************************************955555555555677888888888 PP

            K-box  96 kklee 100
                      kk++e
  TRIUR3_24374-P1 179 KKIQE 183
                      88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
CDDcd002655.52E-41278No hitNo description
SuperFamilySSF554551.83E-31289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.81486187IPR002487Transcription factor, K-box
PfamPF014861.7E-2288182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGKVELKR IDNKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSA RGRLFEFSTS  60
SCMYKTLERY RSCNFNSEAT ATPETELSNY QEYLKLKTRV EFLQTTQRNL LGEDLGPLNM  120
KELEQLENQI EISLKHIRAT KSQQSLDQLF ELKRKVTHVT LLFSLQEQQL QDVNKDLRKK  180
IQETSADSVL QMFCQDVGPS GSSGHANQAN QQEYFHPDCD PSLGMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-218518116101Developmental protein SEPALLATA 3
4ox0_B8e-218518116101Developmental protein SEPALLATA 3
4ox0_C8e-218518116101Developmental protein SEPALLATA 3
4ox0_D8e-218518116101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123700.0DQ512370.1 Triticum aestivum MADS-box transcription factor TaAGL40 (AGL40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184037.11e-145MADS-box transcription factor 5-like
SwissprotA2Y9P01e-119MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-119MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLM7YJV71e-166M7YJV7_TRIUA; MADS-box transcription factor 5
STRINGTRIUR3_24374-P11e-167(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]