PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24172-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 399aa    MW: 42840.1 Da    PI: 4.6893
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24172-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-161966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie +  r+v+++kRr+g++ KA+EL vL+ a+va + fs+ gk +++
  TRIUR3_24172-P1 19 RIEQEDARHVSYAKRRAGLFNKASELAVLTRAQVAALAFSPGGKAFTF 66
                     89******************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.4511070IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-201069IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-201181IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-121232IPR002100Transcription factor, MADS-box
PfamPF003194.7E-181966IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-123247IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-124768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAAPNRRGGS GRKKTVVRRI EQEDARHVSY AKRRAGLFNK ASELAVLTRA QVAALAFSPG  60
GKAFTFGHPS VDSVVERFLA GEGLGACPRA QGAANDRFLA AEGAGAGAGA GEGAADEDNV  120
KRLAQQLAEM RAELTEVKKQ KKRIDKAMAK ERAAGDQIAA WVDPKVRDMG DDDMAAFFAT  180
LLKVKTDVSH RANQVLLDFS RKVEITRLPP AQIFGGSIFE FGSSSGSAHA GMEFQFLVPP  240
PQGQGFEAGM DMHQTVMAAL PPPQGFPSAI DMQVQQQMVM EMPPAQVLAA GSMNMQQQIV  300
MEMPPAQVIA AGVDMQEMPP AQVVAAGMDM QEMPPPPGFA AGIDIMEQMQ MMIGQPPSFE  360
AGMETEFQQW LMAMPPPEFP AGLEMAQQVL EPNAEEEEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185570.11e-127agamous-like MADS-box protein AGL29
TrEMBLM7ZRB10.0M7ZRB1_TRIUA; Agamous-like MADS-box protein AGL62
STRINGTRIUR3_24172-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-20M-type_MADS family protein