PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22207-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 414aa    MW: 46492 Da    PI: 6.0624
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22207-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS73.54e-23120214198
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++P++kf+
  TRIUR3_22207-P1 120 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEACPYFKFG 210
                      5799*****************************************************************9...9******************** PP

             GRAS  95 hlta 98 
                      ++++
  TRIUR3_22207-P1 211 YMIT 214
                      *975 PP
2GRAS23.75.4e-08213273144203
             GRAS 144 iTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                      iTg+++  s   +   l  +g+rL+++A  ++vpfef+  va + e++e  +L v pgEala
  TRIUR3_22207-P1 213 ITGIDDTVSAyaRGGGLDLVGRRLSHIAGLCKVPFEFHS-VAMAGEEVEEAHLGVVPGEALA 273
                      99**998877889999***********************.7999****************98 PP
3GRAS170.31.5e-52272413231373
             GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                      + +l+P+v+++veqe+++n+++F +rf+e+l+yy+a+f+s++ +lpr+++er+++E+++l+re+vn++acegaer+erhe ++kW++rl++aGF
  TRIUR3_22207-P1 272 LAGLRPRVLTLVEQESNTNTAPFPQRFAETLDYYAAIFESIDLTLPRDDRERVNMEQHCLAREVVNLIACEGAERVERHEVFGKWKARLTMAGF 365
                      5689****************************************************************************************** PP

             GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +p pls  +++++++ll+ ++++ y++ e++g+l+lgWk++pLv+ SaW
  TRIUR3_22207-P1 366 RPSPLSALVNATISTLLQSYSEN-YKLAERDGALYLGWKSKPLVVSSAW 413
                      *********************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.4811395IPR005202Transcription factor GRAS
PfamPF035141.4E-20120214IPR005202Transcription factor GRAS
PfamPF035145.1E-50272413IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MADTPTSRMI HPFSNMQRQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HLYSLKSHSS  60
DASYENQDPN DLKQKLKDLE AEMLGPDAEI VNSLESSVAK QLSLEPEKWA QMMDFPRGDL  120
KELLLACARA VEEKNMYAVD VMVPELRKMV SVSGTPLERL GAYMVEGLVA RLASSGHSIY  180
KALRCKEPKS SDLLSYMHFL YEACPYFKFG YMITGIDDTV SAYARGGGLD LVGRRLSHIA  240
GLCKVPFEFH SVAMAGEEVE EAHLGVVPGE ALAGLRPRVL TLVEQESNTN TAPFPQRFAE  300
TLDYYAAIFE SIDLTLPRDD RERVNMEQHC LAREVVNLIA CEGAERVERH EVFGKWKARL  360
TMAGFRPSPL SALVNATIST LLQSYSENYK LAERDGALYL GWKSKPLVVS SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2412741326378Protein SCARECROW
5b3h_A1e-2412741325377Protein SCARECROW
5b3h_D1e-2412741325377Protein SCARECROW
5hyz_A1e-241244148375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641791e-180AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176499.10.0chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLM7ZJK70.0M7ZJK7_TRIUA; Uncharacterized protein
STRINGTRIUR3_22207-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-127scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]