PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_20544-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 293aa    MW: 31947.9 Da    PI: 5.2149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_20544-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10131173540
                      HHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STC CS
              HLH   5 hnerErrRRdriNsafeeLrellPkas.......kapskKlsK 40 
                      h + Er+RR+++N++f++Lr+llP++s        +++ Kl+K
  TRIUR3_20544-P1 131 HMMSERKRREKLNDSFHTLRSLLPPCSkaqvselEEKNNKLEK 173
                      7789*********************998999666555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.321126208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-9128171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7131172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8131169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-7131173No hitNo description
SMARTSM003530.0095132170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MAADIAGLHS ALADPFWPAD LDLMVSTHEV EGMADMDASG FFVGGGDDRF MLPSSTTSSL  60
SSKRSLSLDS GGSSGSGSGS FSLDLADASR YQAPALPGER TSRERSSGGG RGQQQEEPTR  120
AASGNTGQLY HMMSERKRRE KLNDSFHTLR SLLPPCSKAQ VSELEEKNNK LEKHIPTYDC  180
EEDVPHQQRR QRAKVQITKA ASDGVVNLTV MVMVECDVVE LVLRILECLR WMEQVSVMSV  240
DADTYSPQVL LKAIASIKLR IVDDNWNQAL FHEAMTKAVN DATASRPSLV LTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
2135140RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-159HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150412.11e-119putative transcription factor bHLH041
TrEMBLT1MRK60.0T1MRK6_TRIUA; Uncharacterized protein
STRINGTRIUR3_20544-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-14bHLH family protein