PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_17670-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 294aa    MW: 32143.7 Da    PI: 4.6832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_17670-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-112182581055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++ +L+ l+P+      +K++ +++Le+AveY+k +q
  TRIUR3_17670-P1 218 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 258
                      9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14209273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-13213268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12217262No hitNo description
PfamPF000101.0E-8218258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPMETDMMSQ FLGGDHHCFA YEQQDESMEA MAAMFLPALD TDSNSSSSCL NYEVSPQCWP  60
QPQPQPGHSS SVTSFLDPGH GYESFEFPVM DPFPHAEFQS HCTDIPYLGG GGEDLSPLDS  120
NCAPAAGEEA ANDHIPVTNK RKSRAATTAS KKAKKAGKKD FTSNDIEGDD TYVIDPQSSS  180
SCTSEDGGLD GNTKSSSKKT GTRASRGAAT DPQSLYARKR RERINERLKT LQNLVPNGTK  240
VDISTMLEEA VEYVKFMQLQ IKLLSSDDMW MYAPLAYNGI NVSSLEMHIA ALQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153858.10.0transcription factor bHLH69-like
TrEMBLA0A1Y0JWN70.0A0A1Y0JWN7_TRIUA; RSL4
STRINGTRIUR3_17670-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-50root hair defective 6-like 4