PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_16946-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 922aa    MW: 99550.1 Da    PI: 6.6807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_16946-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000777267641355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a     k  s  + Lek+v+++  Lq
  TRIUR3_16946-P1 726 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 764
                      67799************66.....66888899******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.3E-2149196IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00337707764No hitNo description
PROSITE profilePS5088810.588713763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-5726776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-5726769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MAALALAARR RRGGGAPAAV RRGGGASGIW SLFLVVFLPA FFTLDMCRHL VWEDGYCGHT  60
PCPAGSEASQ ARAAELGGSA AVDSICSLVR KDMAEQVHVV GEGICSLVRK DMAEQVHVVG  120
EGTIGRVAFT GSHQWIIHGT ADDHGLSSEV ASEMHYQFRA GIKTIAIIPV LPRGVLQLGS  180
TGVVVENTSF VMHAKKLCSQ LNQRSSMAAS ASVKSTSNQS RPLHGASNIQ AADNSFSQFP  240
VMREQYRRSD SATASSSKSL NASLFEAAQQ NGLTGREHIV YGKPNDMFLQ QASYCDSRLG  300
SNTLSAAISS DLVPSSLASV EQQQMLMNTI GQLEFGSGAD LARSALLKSL LYRNPFMHET  360
SDMKLSHGRV GLSQGTTGHG SYGFLPGSAG VVSTTLCTSS QVSEQGSHSS SGMLRQKQPP  420
VSCNVPQSSE FTMKMVRQER SSESALPVSS QSDAQVSNCL NGISQENLLS RSGHMQKDQN  480
ANRANDTRVA VSTQGVKNVD GCMLPAMPSE TAHSLLLQPT WDNDLFDIFG SEFHQLGHNV  540
DANLVSSCDA KSHSLDRDAA EPSICLDSSS LFSSLDNDFP CSGIFSLTDT DQLLDAVISN  600
VNPSSKQSSD DNASCKTALT DIPNISHFGL EELKQCDSSG IPSTVIKNES TQIVRQPYYF  660
DKTEDGCLSQ NNGAQKSQIR LWIENGQNMK CESASASNSK GLDTQSKSNR KRSRPGESSK  720
ARPKDRQLIQ DRIKELREMV PNGAKQCSID ALLEKTVKHM LFLQSVTKHA DKLKDSTESK  780
ILGSENGPVW KDYFEGGATW AFDVGSQSMT CPIIVEDLDR PRQMLVEMIC EDRGIFLEIA  840
DFIKGLGLTI LRGVMEARKS KIWARFTVEA NRDVTRMEIF LSLVRLLEPN CDGSGAAENP  900
NSVNMPLGLV RQPVIPATGG IQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178282.10.0transcription factor LHW-like isoform X1
TrEMBLT1MGT90.0T1MGT9_TRIUA; Uncharacterized protein
STRINGTRIUR3_16946-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-51conserved peptide upstream open reading frame 7