PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_13152-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 398aa MW: 42826.7 Da PI: 8.7077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_13152-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	6.9e-14	140	186	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN+++ eL +l+P + kK++Ka+i Av+++++Lq TRIUR3_13152-P1 140 DHIIAERRRREKINQRLMELSTLIPGL-----KKMNKATIIGDAVKHVRELQ 186 5999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.262	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	140	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-16	141	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-11	141	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-14	141	189	No hit	No description
SMART	SM00353	2.2E-13	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEESSFMQWA INTLDQHTFP AAASLVYDTG SFHCGDHTAA SFPSQQELGT PPQPLPTTAG 60 DNPDLTVQVD NQYGDSSSGD VVVHAAVARA STPMSWKSSA ASTQPAARGG HKSAAGRRSG 120 SNLQGSAASA SSMSPDPAKD HIIAERRRRE KINQRLMELS TLIPGLKKMN KATIIGDAVK 180 HVRELQEKVN ILENNNKHAA TTTICSTVLV HKNRPCLGGL TSNYGDDNVS EPSQLGTWLP 240 EIKVRFSDKS VLVQIHCENT NGLLVRVLAE VEVLRLAITH TSSMPFLADT TIINITAKAS 300 STQTVIFVPL RFFFKQGNPW ALISSVCIAY TTLVQPIYLI SVGRGVQLNS GGDGQKAQLG 360 ARSTLGYPQP VPYTMVKLVF DVFVSMLTIM GPSPNTTK

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEESSFMQWA INTLDQHTFP AAASLVYDTG SFHCGDHTAA SFPSQQELGT PPQPLPTTAG  60
DNPDLTVQVD NQYGDSSSGD VVVHAAVARA STPMSWKSSA ASTQPAARGG HKSAAGRRSG  120
SNLQGSAASA SSMSPDPAKD HIIAERRRRE KINQRLMELS TLIPGLKKMN KATIIGDAVK  180
HVRELQEKVN ILENNNKHAA TTTICSTVLV HKNRPCLGGL TSNYGDDNVS EPSQLGTWLP  240
EIKVRFSDKS VLVQIHCENT NGLLVRVLAE VEVLRLAITH TSSMPFLADT TIINITAKAS  300
STQTVIFVPL RFFFKQGNPW ALISSVCIAY TTLVQPIYLI SVGRGVQLNS GGDGQKAQLG  360
ARSTLGYPQP VPYTMVKLVF DVFVSMLTIM GPSPNTTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	149	ERRRRE
2	145	150	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174829.1	1e-168	transcription factor bHLH18-like
TrEMBL	T1M6K8	0.0	T1M6K8_TRIUA; Uncharacterized protein
STRING	TRIUR3_13152-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-31	bHLH family protein