PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIUR3_11585-P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 326aa MW: 35749.8 Da PI: 8.0271 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.1 | 3.1e-31 | 55 | 108 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ TRIUR3_11585-P1 55 PRLRWTPELHHCFVRAIHRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 108 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.29 | 51 | 111 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-30 | 51 | 109 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-15 | 52 | 109 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-23 | 54 | 110 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-9 | 56 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEASKGGDGS SGASASNDDS TVEEEGAGRE EQEDACRGNS LSSSSVRPYV RSKNPRLRWT 60 PELHHCFVRA IHRLGGQDRA TPKLVLQLMN VRGLSIGHVK SHLQMYRSKK IDDSGQVIGH 120 LPLPHAFHHR QSGAGTMLSR FGAAAWPPWR SFHEPYWAHG RPFLATGSRT YNSLEAEAEA 180 AFLRSRAQHV ARAASSNPGL MMQSGCPSRN DHHTMNHQHK RLLQPTVCNA DDIHISLDLD 240 LDLSLGLPVP RREAKRKRSG CGWVKEGPDE NGADEEQVDE TSSATMLSLS LFSPGDAPRK 300 MSSTSASDRA VDEHATRRAS TLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 256 | RREAKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373646 | 0.0 | AK373646.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3038H19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183942.1 | 0.0 | transcription factor LUX-like | ||||
TrEMBL | T1M2B6 | 0.0 | T1M2B6_TRIUA; Uncharacterized protein | ||||
STRING | TRIUR3_11585-P1 | 0.0 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-37 | G2-like family protein |