PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08031-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 365aa    MW: 39877.2 Da    PI: 5.6426
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08031-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.43.2e-07854349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i ++    vtf k r g++K    LS  ++a+v v++  ++  ++ +
  TRIUR3_08031-P1  8 IHDDKECDVTFFKQRGGLFKSIADLSAVTGARVVVVLETENEMMHSF 54
                     77888889******************************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0091157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.699158IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-10268IPR002100Transcription factor, MADS-box
PfamPF003191.9E-10854IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
RRSAIAYIHD DKECDVTFFK QRGGLFKSIA DLSAVTGARV VVVLETENEM MHSFGTSSAD  60
PIADAFLSGA PLAVSVDDEA TTARIAQLQS EVARLDMNSM KEYKENQLSI ERMKQIQEQC  120
PGMAANHIFS KEEDLSPGDL NNLSNEISRV HEDIGHRLPQ LHHGHKAMTG GARRKQNMLP  180
SSGPPSNRMR TTPSSVHSLW DHHLPQHQMH SSPLPSPPGH IMAPGFSQVP PIFHPASSPL  240
VPQLASQQET TPNQAHELPP AQDISVKDYV SPCNPVNPQQ NDANSNSTSR YNLAVSPLLV  300
YSGGNDFTVN DPFVYESWGY ALSDQPFRNE YIEKDASLGY NGADVGQSSM GNGGWVDKPP  360
ESSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185126.10.0pheromone receptor transcription factor-like
TrEMBLT1LSU60.0T1LSU6_TRIUA; Uncharacterized protein
STRINGTRIUR3_08031-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.17e-09AGAMOUS-like 17