PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_06561-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 688aa MW: 78414.3 Da PI: 7.5249

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_06561-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	337.1	3.1e-103	314	685	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cAeavs ++++la+ +L+++++++sp+gd +qRla+y++e L+ rl++++s++ + + +++ + + l+ ++l vsP+l+ s TRIUR3_06561-P1 314 LRTLLIHCAEAVSVNNHSLASDILKTIRQHSSPSGDDTQRLAFYLAECLEIRLSGNGSQINQNFIATPRN---AAYILKLFHLGLTVSPYLRSS 404 6789*******************************************************998888877...899999999999***** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + N++I + +g+ +vHiiDf+i G+QWp+L++++a+R++gpp+lRiTg++ p++g e ++t+ rL ++A+ ++vpfe++ +++++ TRIUR3_06561-P1 405 YYFSNKTIIDVSKGKPKVHIIDFGICFGFQWPSLFKQFADREGGPPKLRITGIELPTPGfrPDEINNNTRLRLIEYADMFKVPFEYRQ-ISSKW 497 ******************************************************9977777889****************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++++++++++E l+Vn+++q+++l de++s++s+r++vL+ ++ ++P+++++ + ++n++ Fl rf e ++ y++lfd+le++ pr++e TRIUR3_06561-P1 498 ESITIKDFNIDKDELLVVNCIHQMKNLGDETTSINSARNRVLNNIRMMKPNIFIHGVVNGSYNTPFFLSRFKEVMYRYTSLFDMLEKTTPRDNE 591 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r +Er + + ei n++aceg+er+er e+++ W+ r +a F+++pl+ ++++ +++++r+++ ++ v+ee++ lvlgWk+r L+++S W+ TRIUR3_06561-P1 592 TRLILERDIYKYEILNAIACEGSERIERPESYKIWKVRGLRARFEQLPLNPTIVNGIQHIVRQIYHKEVFVDEEDQFLVLGWKGRILYALSTWK 685 *************************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.016	288	665	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-100	314	685	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
SSQDPIESST AKYNDSEFVL HPPTPLSYSP AVSIVSNKIG PQFCNVSCDG PSAGWRLINV 60 AEHPKTDSDV TLSYIEQMLM QDTDDKVRAP HGDTSIRTME EPFYELLGQK YPVLPDILPP 120 CGCDRLKNLN GNVSRLNGKL CSNCSLYISS DDYHLNENSE ASQAPWTLSA IVGEANKIPL 180 GAERMEIGLN INGLSIAEKP SRDNHSPHMN EKETIKDASF EVRGRKVFPD KEDLDLLEGR 240 RSKQTAIFSD EPIRNEAFDK VLLCCEHQLV VDEGILQRTM ANTSTKYAQK EQGKKLARQT 300 TRGKTRKKKE VVDLRTLLIH CAEAVSVNNH SLASDILKTI RQHSSPSGDD TQRLAFYLAE 360 CLEIRLSGNG SQINQNFIAT PRNAAYILKL FHLGLTVSPY LRSSYYFSNK TIIDVSKGKP 420 KVHIIDFGIC FGFQWPSLFK QFADREGGPP KLRITGIELP TPGFRPDEIN NNTRLRLIEY 480 ADMFKVPFEY RQISSKWESI TIKDFNIDKD ELLVVNCIHQ MKNLGDETTS INSARNRVLN 540 NIRMMKPNIF IHGVVNGSYN TPFFLSRFKE VMYRYTSLFD MLEKTTPRDN ETRLILERDI 600 YKYEILNAIA CEGSERIERP ESYKIWKVRG LRARFEQLPL NPTIVNGIQH IVRQIYHKEV 660 FVDEEDQFLV LGWKGRILYA LSTWKPSE

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

SSQDPIESST AKYNDSEFVL HPPTPLSYSP AVSIVSNKIG PQFCNVSCDG PSAGWRLINV  60
AEHPKTDSDV TLSYIEQMLM QDTDDKVRAP HGDTSIRTME EPFYELLGQK YPVLPDILPP  120
CGCDRLKNLN GNVSRLNGKL CSNCSLYISS DDYHLNENSE ASQAPWTLSA IVGEANKIPL  180
GAERMEIGLN INGLSIAEKP SRDNHSPHMN EKETIKDASF EVRGRKVFPD KEDLDLLEGR  240
RSKQTAIFSD EPIRNEAFDK VLLCCEHQLV VDEGILQRTM ANTSTKYAQK EQGKKLARQT  300
TRGKTRKKKE VVDLRTLLIH CAEAVSVNNH SLASDILKTI RQHSSPSGDD TQRLAFYLAE  360
CLEIRLSGNG SQINQNFIAT PRNAAYILKL FHLGLTVSPY LRSSYYFSNK TIIDVSKGKP  420
KVHIIDFGIC FGFQWPSLFK QFADREGGPP KLRITGIELP TPGFRPDEIN NNTRLRLIEY  480
ADMFKVPFEY RQISSKWESI TIKDFNIDKD ELLVVNCIHQ MKNLGDETTS INSARNRVLN  540
NIRMMKPNIF IHGVVNGSYN TPFFLSRFKE VMYRYTSLFD MLEKTTPRDN ETRLILERDI  600
YKYEILNAIA CEGSERIERP ESYKIWKVRG LRARFEQLPL NPTIVNGIQH IVRQIYHKEV  660
FVDEEDQFLV LGWKGRILYA LSTWKPSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-41	318	685	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153698.1	0.0	scarecrow-like protein 9
TrEMBL	T1LNW4	0.0	T1LNW4_TRIUA; Uncharacterized protein
STRING	TRIUR3_06561-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-146	GRAS family protein