PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_06560-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 690aa    MW: 78241.3 Da    PI: 7.3868
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_06560-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.57.8e-1093136841374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cAeavs ++ + a+ +L+ +++++sp+gd +qRla+y++  L+ rl++s+s++ +++ +++t+    ++ l+  +l + v+P+l+ s
  TRIUR3_06560-P1 313 LRSLLIHCAEAVSVNNRTIASDILKSIRQHCSPSGDDTQRLAFYLADCLEIRLSGSGSQINQKVITTPTN---AAHILKLCHLCFTVCPYLRSS 403
                      689**********************************************************999998887...8999999999*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      + + N++Il+  +g+ rvHiiDf+i +G+QWp+Ll+++a+R++gpp+lRiTg++ p++g    e+ ++t+ rL+++A+ ++vp+e++  +++++
  TRIUR3_06560-P1 404 YYLSNKTILDVSKGKPRVHIIDFGIFYGFQWPSLLKQFADREGGPPKLRITGIELPTPGfrPDEMNKNTRLRLTEYADIFQVPLEYRQ-ISSKW 496
                      **********************************************************9*88899999********************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++eeL+++++E+l+Vn++l+++++ de+ +++s+r++vL++++ ++P+v+++   + ++n++ Fl rf e +++y+++fd+l+++ pr++e
  TRIUR3_06560-P1 497 ESISIEELNIDKDEVLVVNCILRMKNVGDETITIDSARNRVLNTIRMMKPTVFIHGVVNGSYNTPFFLSRFKEVMYHYTSMFDMLDKTTPRDNE 590
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r+ +Er + + +i n++aceg+er+er e+++kW++r  +a F+++pl+ +++k +++++r+++ + + v+ee+++lvlgWk+r L+++S W+
  TRIUR3_06560-P1 591 TRMILERDIYKYAILNAIACEGSERIERPESYKKWNARSVRARFEQLPLNPTIVKGIQHMVRQIYHKDFFVDEEDQCLVLGWKGRILYALSTWK 684
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.229287664IPR005202Transcription factor GRAS
PfamPF035142.7E-106313684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
SDSEFILHPP APVSYCPQLS IVSNKVGHVS WSTSSSCKIY SPQLYSANCD ETSAGWRLIS  60
VAEHPKTDSD VTLSHIEQML MQDTDDKVRA PHGETAIRTM EEPFYELLGQ KYPVLPGLLP  120
LCGCDRLNIL ENGSVSRLNN GQLCNNCSVK ISSDNYHSNG SSQASQAPWT LSAIVGEAIQ  180
FPLGVEEMGI GLNINGLSIS PESHSQHMND KDTIKHAPFH DRSRKVFPGI EELDLLEGRM  240
NKQIAIFSDE PIRNEAFDKV LLCSEHKPLD EGIILQRTMA DISTKYAQNE QGRKPARQTK  300
RGKTRKKKEV VDLRSLLIHC AEAVSVNNRT IASDILKSIR QHCSPSGDDT QRLAFYLADC  360
LEIRLSGSGS QINQKVITTP TNAAHILKLC HLCFTVCPYL RSSYYLSNKT ILDVSKGKPR  420
VHIIDFGIFY GFQWPSLLKQ FADREGGPPK LRITGIELPT PGFRPDEMNK NTRLRLTEYA  480
DIFQVPLEYR QISSKWESIS IEELNIDKDE VLVVNCILRM KNVGDETITI DSARNRVLNT  540
IRMMKPTVFI HGVVNGSYNT PFFLSRFKEV MYHYTSMFDM LDKTTPRDNE TRMILERDIY  600
KYAILNAIAC EGSERIERPE SYKKWNARSV RARFEQLPLN PTIVKGIQHM VRQIYHKDFF  660
VDEEDQCLVL GWKGRILYAL STWKPSESGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-443176848375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292307RKPARQTKRGKTRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153699.10.0scarecrow-like protein 9
TrEMBLA0A446N3F20.0A0A446N3F2_TRITD; Uncharacterized protein
STRINGTRIUR3_06560-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117882640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-140GRAS family protein