PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_04104-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 374aa    MW: 41341.4 Da    PI: 6.302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_04104-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.74.6e-111459449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      ++  r vtf kRr g++K A  L   ++a+vavi+   + k+y +
  TRIUR3_04104-P1 14 HDDKERDVTFFKRRGGLFKSAADLNAITGARVAVILETGKKKMYSF 59
                     57889*************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-7162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.357363IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-14679IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141459IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPRRGRRVGI AYVHDDKERD VTFFKRRGGL FKSAADLNAI TGARVAVILE TGKKKMYSFG  60
TPSAGPIVDV FLSAAPLGNR LTEKETSAKI SQLQSEVARL DMEHGMEDKR NELSIQHVKQ  120
IQEQYPGMVA NLIFSKEQDL NLEDAKKLFN ELSRVYEDTR RRLPKLHHSY KAITSDASVI  180
QNMLPSSGPS LKSLNTIPSS VHSMWDHHLP QHHMPSTPLV SPPDHNVEPV FPRAPQMFHV  240
ASATSGPQFA SQLQGIPNQV QDLPPTDLHV EDYISPCDIV HPPQNNASPI STTEHNMEAS  300
PLLVYSSGND FVVDDPFGHD QWGFALPDQQ LYNRFLGMDG YLGYNGTDVG QSSMGNGGRV  360
DAPPESSPGK QDAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160767.11e-137floral homeotic protein APETALA 1-like
TrEMBLT1LHE50.0T1LHE5_TRIUA; Uncharacterized protein
STRINGTRIUR3_04104-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-13AGAMOUS-like 62