PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_03721-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 140aa    MW: 14944.8 Da    PI: 8.3825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_03721-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-051941123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  TRIUR3_03721-P1 19 YTCSFCKREFRSAQALGGHMNVH 41
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-71645No hitNo description
Gene3DG3DSA:3.30.160.606.5E-41743IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.3E-71942IPR007087Zinc finger, C2H2
SMARTSM003550.00381941IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.241946IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
REQQPWRYSC SFAWPPRSYT CSFCKREFRS AQALGGHMNV HRRDRARLRH GSPPPPPPQL  60
AAAAGSPNPR RAAAAAAIPN LNYPPPPPSQ PSLCNELSSV AAASTGALGL SLELGLEAGV  120
QSCAKEDDDG LDLELRLGCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-141441229superman protein
2l1o_A1e-141441229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195837.12e-59transcriptional regulator SUPERMAN-like
TrEMBLT1LGD32e-95T1LGD3_TRIUA; Uncharacterized protein
STRINGTRIUR3_03721-P14e-96(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.14e-21C2H2 family protein