PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF099900100CFD_t1
Common NameTRAES_3BF099900100CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 496aa    MW: 54526.5 Da    PI: 6.607
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF099900100CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.46.1e-21115221185
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                              +Wt+ +v++Li+++ + +e+ +  +                     ++k++W++vs++m ergf++sp+qC++k+++lnkryk++ 
  TRAES3BF099900100CFD_t1 115 KWTDAMVRLLIAVVYNAGEDGEGVSaggkaaaahshgkavasaaaqQRKGKWRSVSRAMVERGFKVSPQQCEDKFNDLNKRYKRVV 200
                              7************996666666432334455666666677777777**************************************** PP

                 trihelix  66 egekkrt.sessstcpyfdql 85 
                              e  +++t ++++ + +++d +
  TRAES3BF099900100CFD_t1 201 ELLGRGTaCNVVANPALLDTM 221
                              *****9549999998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-18113248No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MERVDGGAGL GARGSAGAML GMEMHLVHQP QPQIHAASSF QQPPEHLRHA NGGFQVQHHQ  60
AMPMRQQHPP PSYAAYVAPP SRAVNAHEEE EMGNGVGAVQ QPGAGTAGCS WSRMKWTDAM  120
VRLLIAVVYN AGEDGEGVSA GGKAAAAHSH GKAVASAAAQ QRKGKWRSVS RAMVERGFKV  180
SPQQCEDKFN DLNKRYKRVV ELLGRGTACN VVANPALLDT MGELTAKAKE EARKLLRSKR  240
LFFREMCHYH NPGGTATASH GTEGGADCFD NPRPATAPAG RQVVNSSTRS EDDSEDDVLS  300
SKEVEEEEED DDDYDLDDVE EKAPGTKRRD DRVDDSNGFH NYGGHKNKLR RGESSAAAAG  360
EDKEENGNNK PARSTMQQLK RELAAVEAGG DQQQLRQWVQ RRALELEKQE LAYEVQDFAL  420
GKRRYKWEQF KATKDWDMEH ERLRIECLRV DGRRMLLMLK QKELDLDDLP GAQTPPPGAA  480
FQQQPGSSPS TTGHPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163766.10.0uncharacterized protein LOC109749193
TrEMBLA0A077RTQ50.0A0A077RTQ5_WHEAT; Uncharacterized protein
TrEMBLA0A446PGH10.0A0A446PGH1_TRITD; Uncharacterized protein
STRINGEMT161510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-39sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]