PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF091200090CFD_t1
Common NameTRAES_3BF091200090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 535aa    MW: 60189.9 Da    PI: 6.5482
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF091200090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.2e-20398458257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              r+R+t+t+ ql++Le +F++ n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  TRAES3BF091200090CFD_t1 398 RQRWTPTQMQLQILEIVFNQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 458
                              89*****************99**************************************97 PP
2Wus_type_Homeobox987.2e-32397460265
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              ar+RWtPt+ Q++iLe ++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  TRAES3BF091200090CFD_t1 397 ARQRWTPTQMQLQILEIVFNQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 460
                              789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-16392463IPR009057Homeodomain-like
PROSITE profilePS5007114.495394459IPR001356Homeobox domain
SMARTSM003897.1E-14396463IPR001356Homeobox domain
SuperFamilySSF466895.13E-17397464IPR009057Homeodomain-like
PfamPF000463.7E-18398458IPR001356Homeobox domain
CDDcd000861.35E-13398460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSLKGYHEAS LHPPAAYDAA APEEWEWDWG EALLDRSAYM VDKKDHQKNH TSACHRFRRN  60
LRGREVKVEM QVSLFMAPPP RVSYFCCSAN RTDDADDEHR EQEDAPRLFV REPWMIATAG  120
DLALLTLCHG HNRAFYGENS NYDYFLYQAA ASPAGSPELT RLPRPQPDML PAFGTRCFPT  180
GSIGVLRYHS NSPKDDACDA YRIAALAYDP FHPGHSGYYL CTYDSKDPRW RRTPTASPQP  240
PPPDDFVSSK VHAEPSPRSQ TPSGWTVVTW TLEGLNGGLD AMFFRQEHEI HSGDIHGYNL  300
PQSLFVSNPI LSSHSDGVLY LLTNASSENT NTRTSKVIAL DLNQKTLLDV QEFDMQRPSS  360
YMATSISSYL MPAAAGMSLG NLYCDPLMVH GGQKITARQR WTPTQMQLQI LEIVFNQGNG  420
TPSKQKIKDI TAELSQHGQI SETNVYNWFQ NRRARSKRKQ AASSLPNNAE SEAEGDEESL  480
TDKKPRSDGS QQQNMAVRAH NPERISEMHR HFDAAEREQV RGPMMYGSSN DTSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451459RRARSKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077RQB30.0A0A077RQB3_WHEAT; Uncharacterized protein
TrEMBLA0A446PF550.0A0A446PF55_TRITD; Uncharacterized protein
STRINGEMT243521e-110(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-33WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]