PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF076800040CFD_t1
Common NameTRAES_3BF076800040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 277aa    MW: 28969.2 Da    PI: 7.992
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF076800040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.12.3e-29132184255
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              +rl+Wtp+LH+rFve+v++L G++ A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  TRAES3BF076800040CFD_t1 132 ARLVWTPQLHKRFVEVVAHL-GIKSAVPKTIMQLMNVEGLTRENVASHLQKYRL 184
                              79******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.297128187IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-30129189IPR009057Homeodomain-like
SuperFamilySSF466896.45E-19129188IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-24132184IPR006447Myb domain, plants
PfamPF002492.6E-8134183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGEEAGGYDF DFGGGGYGGY DGRVTEWETG LPGCDELTPL SQPLVPPGLA AAFRIPPEPG  60
RTLLDVHRAS SATVSRLRSA SSSPSSGNGH ATGGGSFPSF PGKAAAAADG NRDNNSAESG  120
GDKSAAAATK RARLVWTPQL HKRFVEVVAH LGIKSAVPKT IMQLMNVEGL TRENVASHLQ  180
KYRLYVKRMQ GLSNEGPSAS DHIFASTPVP PSLREPQVPV PHAAAMAPAM YHHHPAPMGG  240
VAAGHGGYYQ QQHSGHAVYN GHGGGVSSYP HYHHGDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-33131187157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
GenBankKF7694440.0KF769444.1 Triticum aestivum cultivar Chinese Spring LUX-B gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165352.11e-144transcription factor PCL1-like
SwissprotQ94DH37e-85PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A080YUH80.0A0A080YUH8_WHEAT; Uncharacterized protein
STRINGMLOC_37446.11e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.36e-61G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]