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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
TRAES3BF065400010CFD_t1 |
| Common Name | MYB56, TRAES_3BF065400010CFD_c1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
MYB |
| Protein Properties |
Length: 264aa MW: 29193.5 Da PI: 8.4764 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| TRAES3BF065400010CFD_t1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +l+ v+++G ++W+ a+ g++Rt+k+c++rw +yl
TRAES3BF065400010CFD_t1 29 KGPWTEQEDMKLAWFVRLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 76
79********************************************97 PP
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| 2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr+++eE+ l vd+++++G++ W++Ia+ m+ gRt++++k++w+++
TRAES3BF065400010CFD_t1 82 RGRMSPEEERLVVDLHARWGNR-WSRIAKAMP-GRTDNEIKNYWRTH 126
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MKTKQASKAK AAPSPGKEEE AVAPGGFRKG PWTEQEDMKL AWFVRLFGER RWDFLAKVSG 60
LNRTGKSCRL RWVNYLHPDL KRGRMSPEEE RLVVDLHARW GNRWSRIAKA MPGRTDNEIK 120
NYWRTHTRKL HKDTRAASAA SASTTTTTST SMSAASPATT SSSSSSSTND NDNHSHHGHG 180
DQETAASQEQ ADHQLLYTSG IGMDSHLLWN DALMDSYAWG AAAPSMIVPP PSSPVWDYCC 240
SDSLWGIGDD EVEYKKMLAV AGAP
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 1e-26 | 29 | 129 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 6e-26 | 29 | 129 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 6e-26 | 29 | 129 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 2e-26 | 29 | 129 | 4 | 103 | C-Myb DNA-Binding Domain |
| 1msf_C | 2e-26 | 29 | 129 | 4 | 103 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX183617 | 0.0 | JX183617.1 Triticum aestivum MYB protein (MYB56) mRNA, MYB56-B allele, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Zhang L, et al.
Overexpression of a wheat MYB transcription factor gene, TaMYB56-B, enhances tolerances to freezing and salt stresses in transgenic Arabidopsis.
Gene, 2012. 505(1): p. 100-7
[PMID:22634104] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Nature, 2012. 491(7426): p. 705-10
[PMID:23192148]
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