PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF008500030CFD_t1 | ||||||||
Common Name | TRAES_3BF008500030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 295aa MW: 30770.5 Da PI: 6.4175 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.9 | 3.2e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C ++C+++p++ +++q++++ +++k++G++ +l+ll+a + r+++++sl+yeA+ r+ +PvyG+vg+++ TRAES3BF008500030CFD_t1 4 SCNGCRVLRKGCGEGCTIRPCLewirsADAQANATVFLAKFYGRAGLLNLLAADGPGLRPALFRSLLYEACGRMVNPVYGSVGLLW 89 6*********************9999667889****************************************************** PP DUF260 82 klqqqleqlkaelallke 99 ++q++ +q+++e++l ++ TRAES3BF008500030CFD_t1 90 SGQWEACQAAVEAVLKGR 107 ***********9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.039 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCGEGCT IRPCLEWIRS ADAQANATVF LAKFYGRAGL LNLLAADGPG 60 LRPALFRSLL YEACGRMVNP VYGSVGLLWS GQWEACQAAV EAVLKGRPIV RVTSDAPLAA 120 CDIRHVAKAD RPAASPEAAA AAGTVLGVSR AGRTGVKRAS SSTAKPKSKS FSGAKHDGGL 180 DQAPSHEESA GSHDHGSHVE DDGMAVEQAR EEESSEGTDV DAGSHVSQAE RSPVPPVAQD 240 EEAHDDEIGL ELTLGFQQVT PRVVARSPPA GARFGASSSS AESRHIGLLL ELPVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171256.1 | 0.0 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 9e-68 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A077RSD6 | 0.0 | A0A077RSD6_WHEAT; Uncharacterized protein | ||||
STRING | BRADI4G16740.1 | 1e-118 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67100.1 | 8e-65 | LOB domain-containing protein 40 |
Publications ? help Back to Top | |||
---|---|---|---|
|