PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0018s0181.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRF
Protein Properties Length: 552aa    MW: 57804.2 Da    PI: 8.3064
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0018s0181.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC68.96.3e-22130171243
                   WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                            epgrCrRtDGKkWRC r+v++++k+CE+H+hrgr+r r+  
  Sphfalx0018s0181.1.p 130 LEPGRCRRTDGKKWRCGRDVVPDQKYCEKHVHRGRQRPRRNA 171
                           69***********************************99875 PP
2QLQ38.14.7e-145690236
                   QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                          +FT  Q++++ +Q l++Ky++a++ vP+eLl +i+
  Sphfalx0018s0181.1.p 56 PFTSGQWAEFAHQDLIFKYMMAGLNVPQELLNPIC 90
                          9*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009510.00485591IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-95690IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166615.8315691IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.233129173IPR014977WRC domain
PfamPF088793.3E-18131169IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MGLYAAAHDW SRVAGSASAS LLCGRGAAAE GMNEMAGSTQ LYQLQHSSLV SGSRAPFTSG  60
QWAEFAHQDL IFKYMMAGLN VPQELLNPIC SRSTGPAGLM NSMTSSCHNA ANLRWGPAIH  120
RSGVQSSTDL EPGRCRRTDG KKWRCGRDVV PDQKYCEKHV HRGRQRPRRN AVELGPHAAA  180
AATGSSPSAT SSSSGAAATA VHVSAGTTNV GPIRTSSTTS GGGTSGSSCF SLSSCLQQQQ  240
HRPSSNLSVK SCFSSSHSSP SPGSGGGSSP AGSSQFGQLP SLTSSPSAVA AASTFASKDY  300
SRYLAASSVM KSDQQQGIGS EQQHSILSSE TLGSTARGQG HETSQMLSNL SRLQSVNQSW  360
HSLLSSKVPA AHHESKVNSN SCSSGLLHFG HSTSSPQLTR GQLLGQDFGL LSDQTGGQVD  420
HVTHSMSAAQ QQAQAYHAVS NASYGSAESV SVQARRESEG QPLRHFFDDW PRSRDRSAMT  480
SWGSGSVDEP DQEHSNSDIN LSTHLATPSI NNTQLSISIP ITAAASSAHE HPGSPTADFW  540
RDHAIRYGVA N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-30growth-regulating factor 5