PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025470_torf.t1
Common NameSOVF_025470
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CO-like
Protein Properties Length: 440aa    MW: 49938.8 Da    PI: 4.649
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025470_torf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.33e-081759440
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  Sp_025470_torf.t1 17 RACESCLKRRARWFCAADDAFLCHACDSLVHSAnelagrHKRV 59
                       68*****************************668888899877 PP
2CCT67.63.4e-23389432144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++
  Sp_025470_torf.t1 389 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRLKGRFVKRT 432
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.311461IPR000315B-box-type zinc finger
SMARTSM003362.5E-91461IPR000315B-box-type zinc finger
CDDcd000212.96E-101761No hitNo description
PfamPF006431.7E-61759IPR000315B-box-type zinc finger
PROSITE profilePS5101716.003389431IPR010402CCT domain
PfamPF062031.2E-17389431IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MITQKKTVNG VGGKTSRACE SCLKRRARWF CAADDAFLCH ACDSLVHSAN ELAGRHKRVR  60
LESKLINTQP LPPPPPPPPP ESSCWHQGFT KKARTPRNNN NNNNNNNKAR KPSFSSNNNN  120
SYEMRVVPEV GNEDDEGSIE DRSEAAAVFS VPSLEFDNHL FQNNNAFEEG GDLLIGFEGD  180
NNDWENYLPP GFLPSDNDLA EFAADVESLL EQEVAEEGGV KGDEEANDEF QLIYPGVKVE  240
EEGDISTNDH CYFDWSIDME SEMFNFDLNN NCGDEEEEEN GKEGVVPKHE VAEVAEEEEE  300
EEELEKSNDM NAYNNSNKRR KILLRLNYEE VINAWASQGC VSPWTTGRRP EFDLDHHGFP  360
YCMGGTFTNR PGEEWTGVRG NMNGGDEGRE ARVSRYREKR RTRLFSKKIR YQVRKLNAEK  420
RPRLKGRFVK RTSLSQVVGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399415RRTRLFSKKIRYQVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855537.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A0K9RWY60.0A0A0K9RWY6_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-38B-box type zinc finger protein with CCT domain