PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g088130.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 38254.2 Da PI: 4.8348 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.1e-10 | 170 | 212 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ Lr+++Pk + K++ +iL +++Y k+L Sopim12g088130.0.1 170 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 212 79*********************66......**************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-14 | 167 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-14 | 170 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 170 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00163 | 170 | 222 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEDYYRENEF LLDELFSLRS DLWESTCLPM EINSSSSNLF CNNINYNCFG EIPLPSTTTT 60 TTTTTSFEDY YNNFPINQSQ NYSLLHNEFY TTQKVDVLSP LELTNSFNSQ LDDFSSIYFD 120 VGNFGDCKLE RTQSTASSAA IAPANFNIGA CLDKKSKKKK VNGEPSKNLM AERRRRKRLN 180 GRLSMLRSIV PKISKMDRTS ILGDTIDYTK ELLEKINNLQ QEMELGSNQL SLMSIFKNEK 240 PIEMFVRNSP KFNVERRNNI DTRVEINCAN KSSLLLSTLT TLDALGLEPQ QCVISCFNDF 300 AMQASCCEEM EQRGVTDAEE IKQALFKNAG YVGKCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 177 | KKKVNGEPSKNLMAERRRRKR |
2 | 171 | 178 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252727.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 1e-67 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | M0ZPM3 | 1e-147 | M0ZPM3_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g088130.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-63 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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