PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g036430.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 165aa    MW: 18842.1 Da    PI: 6.3642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g036430.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.6e-07102130532
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C.. CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.ask 32 
                         h  +Er RR+++ + fe+L +l+P+ + k
  Sopim12g036430.0.1 102 HIWMERERRKKMQTLFETLHSLVPNlPAK 130
                         5568*********************5423 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.6E-795132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-595132No hitNo description
Gene3DG3DSA:4.10.280.103.4E-6101130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4102130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MIRGDENNHD FPWETNDFWS YLNLNDNHVG SGETFDGDKL PDLTRSDTCQ PLIVVKEVVQ  60
TTIGVGKKRS PPNRKRNGKE IAESNSDADR AETKRKSEHE IHIWMERERR KKMQTLFETL  120
HSLVPNLPAK AKGGSDTTQF SEEFTVEERF MQAAIQIMPL TTPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193111KRKSEHEIHIWMERERRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163699.14e-68PREDICTED: transcription factor bHLH95-like
TrEMBLA0A3Q7J7Y39e-93A0A3Q7J7Y3_SOLLC; Uncharacterized protein
STRINGSolyc12g036430.1.11e-120(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-13bHLH family protein