PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim11g065540.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 310aa MW: 35990.4 Da PI: 5.0016

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim11g065540.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.2	4.1e-46	12	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppG+rF P+deel+ +yLkkkv ++ l+ ++ik+v++yk+ P++L +++ +ekewyfF++r++ky++g+r+nra+ +gyWkatg dk+ Sopim11g065540.0.1 12 PPGYRFCPHDEELILHYLKKKVMNEFLPY-NIIKDVNLYKYCPNELAENFPIlGEKEWYFFTPRRRKYPNGERPNRAAGTGYWKATGADKP 101 9*************************9.89**********8543333899******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k+ +vg +k Lvfy+g+ p+g kt+W+mhe+r+ Sopim11g065540.0.1 102 IIH-KNVKVGFRKALVFYEGKPPNGIKTNWIMHEFRV 137 .9999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-55	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	53.787	11	163	IPR003441	NAC domain
Pfam	PF02365	5.4E-25	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MVETRDHNFV YPPGYRFCPH DEELILHYLK KKVMNEFLPY NIIKDVNLYK YCPNELAENF 60 PILGEKEWYF FTPRRRKYPN GERPNRAAGT GYWKATGADK PIIHKNVKVG FRKALVFYEG 120 KPPNGIKTNW IMHEFRVDES RMIKTHASDM RLDDWVLCRI YKKVDKSSKT QTPPQKDDDH 180 EQENPINLAE VENPINLAEV ENPINSGAEV ENPINSGAEV WNPTNSGAIA NYFYEETMNS 240 CGESQPTYQN NPNIAINPYS CYDPTLNYVL NLPPPFPLDN MQYEPNTNLS DQINYNIYDC 300 DDLDKNQFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-56	12	169	16	174	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	76	PRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321). {ECO:0000269\|PubMed:17124321}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251362.1	0.0	NAC domain-containing protein 2-like
Swissprot	A0SPJ4	2e-62	NAMB1_TRIDC; NAC transcription factor NAM-B1
Swissprot	A0SPJ6	1e-62	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	K4D9G4	0.0	K4D9G4_SOLLC; Uncharacterized protein
STRING	Solyc11g065540.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-62	NAC domain containing protein 47

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]