PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g044320.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 33124.8 Da PI: 9.8884 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ ++ ++G+g W+tI + R+ ++k++w++ Sopim11g044320.0.1 5 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 56 79***********************************66***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.941 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.68E-15 | 2 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.56E-18 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 24.155 | 114 | 188 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 8.71E-16 | 118 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.5E-12 | 118 | 183 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 6.8E-15 | 119 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 6.4E-8 | 125 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGI LKHGPGKWRT ILKDPEFSGV LCLRSNVDLK DKWRNMTVMA 60 NGWGSREQAR LAVKKMRQAP KQDGSPLTDT TAADSDEEAA ETRTVTTSSG SPQTHGSKRS 120 MIRLDNLIME AINTLKEPGG SNKITIAEYI EDQYWAPPNF KRLLSGKLKY LTATGKLIKM 180 KRRYRIVPMS TPSDSRRNLS LPLLDSRQRI FPKIDRDDMT MLSTSQIDLE LARMRNMTPQ 240 EAAAAAAQAV AEAEEAIAEA EEAGREAEAA EADAEAAQAF SVAAKKTLHG RSTPRMMIHA 300 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250736.1 | 0.0 | telomere repeat-binding factor 1 | ||||
Refseq | XP_010313071.1 | 0.0 | telomere repeat-binding factor 1 | ||||
Refseq | XP_010313072.1 | 0.0 | telomere repeat-binding factor 1 | ||||
Swissprot | Q8VWK4 | 1e-100 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A3Q7IWG4 | 0.0 | A0A3Q7IWG4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g044320.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2864 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 6e-94 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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