PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g006640.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 387aa    MW: 42436.6 Da    PI: 6.5121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g006640.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.14.8e-062763141154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sopim10g006640.0.1 276 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 314
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.027265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0066271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-12275334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-6275318No hitNo description
Gene3DG3DSA:4.10.280.102.2E-9275331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAEEFQLGGG NWWENNTSTS SRNRFDSSGS SITPTTSTSA TTTDYSSNWP IQTNHVDIKP  60
RTFLDSVSVS QSSDHDDKGE GGGGGGGGVL SSHDSNFQIM GLGLTSQPHD WNHQSLLNYE  120
DSSSQMNIRG FSLDQNNSIF SHSSNYEVTD NHQVLHSSTT NSWSKFPQFL RASPSPEQPP  180
LPPPARPLPP PHSQLHFSNN TPFWNASAAS MNDVPSSLFP SNLHNIPNNT TIDEKAKNMG  240
DVRDINRIIS KKTTTIETSN KRPRNETSTP SPIIKVRKEK MGDRITALQQ LVSPFGKTDT  300
ASVLSEAIEY IKFLHDQIGA LSAPYMKSGA SMQHLQSDNK SEDIGEGRNK DLRSRGLCLV  360
PISSTFPVTH ETNVDLWTPT FGSTFR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331220.0AC233122.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence.
GenBankAC2401920.0AC240192.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence.
GenBankAC2402240.0AC240224.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248340.10.0transcription factor bHLH123-like
SwissprotQ8GXT34e-62BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A3Q7IAA00.0A0A3Q7IAA0_SOLLC; Uncharacterized protein
STRINGSolyc10g006640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]