PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g074810.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 156aa    MW: 17496.2 Da    PI: 8.7541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g074810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-057382255
                        HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         Lr+l+P  +   ++K s ++    Av+YIk+Lq
  Sopim09g074810.0.1  7 SLRSLIPIEF--IKGKRSASDHMHAAVNYIKYLQ 38
                        7*******65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.613137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-6447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MANLVTSLRS LIPIEFIKGK RSASDHMHAA VNYIKYLQKN IQELDNTRKC IISLDNQNKS  60
STIVDIFQQN NNCVTVNKCE DGMEILINVN NSNKEDIFSL SKVLRWLLKQ GLNVVSCDNS  120
KKDERTLIRI QCQVSDISSG LTVVGLQKKL TDVIN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476010.0EF647601.1 Solanum lycopersicum chromosome 9 clone C09HBa0099P03, complete sequence.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326593.11e-106transcription factor bHLH125-like
RefseqXP_010326594.11e-106transcription factor bHLH125-like
TrEMBLA0A3Q7I5D34e-91A0A3Q7I5D3_SOLLC; Uncharacterized protein
STRINGSolyc09g074810.2.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.13e-23bHLH family protein