PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g063010.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 558aa MW: 60277.6 Da PI: 6.3855 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.6 | 1.7e-16 | 351 | 397 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Sopim09g063010.0.1 351 VHNLSERRRRDRINEKMKALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 397 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-21 | 344 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-21 | 345 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.15E-17 | 350 | 401 | No hit | No description |
Pfam | PF00010 | 5.3E-14 | 351 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-19 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MNHSVPDFDM DDDYSLPASS GITRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKPHI 60 GNGSGGGGDA VIPSDQAVSR EIRHVEETTP HHLFMQEDEM ASWLHYPLDD PSFERDLYSD 120 LLYPTPTSTF TTAALPRENR TSTFEIRPPP PQPSPAAPIG TAPRPPIPPS RRTVTENSNR 180 FQNFGHFSRL PKARLEPGQA NLSKSPRDST VVDSNVTPIT GQESRVTLIP DNVVAVPGGN 240 VGCSTVNGST GTATASTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP APAPSHKGAA 300 PTATAAADDR KRKGREMEDE GQNEDAEFES PDTKKQARGS TSTKRSRAAE VHNLSERRRR 360 DRINEKMKAL QELIPRCNKT DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMYPGMQPY 420 MPPMGMGMGM GMGMDIGMNR PMVPYPPLLP GTAMQNAAAA AQMGPRFSIP QFHLPPVPVP 480 DPSRMQASSQ PDPMLNSLVS HNSNQPRLPN FSDPYQQFFG LQQAQVALPQ NQAVEQPSNS 540 KSGSSKEVGN PGNHQSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 355 | 360 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247109.1 | 0.0 | transcription factor PIF1 | ||||
TrEMBL | M1BMV1 | 0.0 | M1BMV1_SOLTU; Uncharacterized protein | ||||
STRING | Solyc09g063010.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4059 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 1e-39 | phytochrome interacting factor 3-like 5 |