PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g075110.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 285aa    MW: 32720.1 Da    PI: 4.7042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g075110.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09165211455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         a +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  Sopim08g075110.0.1 165 AQSMAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATYKYIKLLQ 211
                         567889*******************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-12158218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-10159213No hitNo description
Gene3DG3DSA:4.10.280.105.5E-11160213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.982161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMTMQQLLFD FNYDVEQNFS DENQDCYFDP DEFILPIEMN NSCCFMPEYS VLEKQPKDNH  60
SCFIPEYSVF ENIPKRQKIF QDDFFPNPNS NTITPSTHNS CFMPEYSVFE KQQKLFQDNF  120
HEEGFLPNPP MFEDFALPEI PVPVFSAGVV AKKGGSSNNE KKMSAQSMAA RQRRKKISDK  180
TQELGKLIPG GHRMNTAEML QATYKYIKLL QAQAGILAFI GSYQESFETP NLQKLVGSSL  240
VQEKLYSSEH CLVPKVFVEA LENNQEFQNS QILEEIKTLM KEGK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246217.10.0transcription factor bHLH53-like
TrEMBLA0A3Q7HSY40.0A0A3Q7HSY4_SOLLC; Uncharacterized protein
STRINGSolyc08g075110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-26bHLH family protein