PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 214aa MW: 24055.9 Da PI: 6.1311

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g065910.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + +G++ +W + +++ g++R++k+c++rw++yl Sopim08g065910.0.1 14 RGQWSPEEDEILKNHIFNHGNPgSWIALPKRAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	49.3	1.2e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T++Ed + + +qlG++ W+ Ia++++ gRt++++k++w++ Sopim08g065910.0.1 69 GNFTQDEDNTICSLYNQLGSR-WSVIASKLP-GRTDNEIKNHWNT 111 79*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-21	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.209	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.89E-26	12	109	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-10	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-14	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.68E-7	17	62	No hit	No description
PROSITE profile	PS51294	21.09	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-23	66	117	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-13	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-13	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.16E-10	70	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MVRAPCCDKS KVKRGQWSPE EDEILKNHIF NHGNPGSWIA LPKRAGLNRC GKSCRLRWLN 60 YLRPNIKLGN FTQDEDNTIC SLYNQLGSRW SVIASKLPGR TDNEIKNHWN TKLKKKVSAT 120 KEAMKLPIPS SDSADKNMVE TGEKNPRFTQ EEDHSKISPS IEGSTSFETC SSPLDDLAWF 180 ESFFPMDSNT SDGIWSTQQD GIDDFPSDDL LGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-24	14	117	27	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009286	0.0	AP009286.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0239G21, complete sequence.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245380.1	1e-158	transcription factor MYB36-like
Swissprot	Q9M2Y9	5e-57	RAX3_ARATH; Transcription factor RAX3
TrEMBL	K4CLH0	1e-156	K4CLH0_SOLLC; Uncharacterized protein
STRING	Solyc08g065910.1.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	2e-59	myb domain protein 84

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Pal S, et al. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. Plant Physiol., 2017. 175(2): p. 916-926 [PMID:28827455]