 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim08g065910.0.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
MYB |
Protein Properties |
Length: 214aa MW: 24055.9 Da PI: 6.1311 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g065910.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.3 | 5.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l++ + +G++ +W + +++ g++R++k+c++rw++yl
Sopim08g065910.0.1 14 RGQWSPEEDEILKNHIFNHGNPgSWIALPKRAGLNRCGKSCRLRWLNYL 62
89*********************************************97 PP
|
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g++T++Ed + + +qlG++ W+ Ia++++ gRt++++k++w++
Sopim08g065910.0.1 69 GNFTQDEDNTICSLYNQLGSR-WSVIASKLP-GRTDNEIKNHWNT 111
79*******************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MVRAPCCDKS KVKRGQWSPE EDEILKNHIF NHGNPGSWIA LPKRAGLNRC GKSCRLRWLN 60 YLRPNIKLGN FTQDEDNTIC SLYNQLGSRW SVIASKLPGR TDNEIKNHWN TKLKKKVSAT 120 KEAMKLPIPS SDSADKNMVE TGEKNPRFTQ EEDHSKISPS IEGSTSFETC SSPLDDLAWF 180 ESFFPMDSNT SDGIWSTQQD GIDDFPSDDL LGD*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP009286 | 0.0 | AP009286.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0239G21, complete sequence. |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |