 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim08g065380.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
MYB_related |
| Protein Properties |
Length: 270aa MW: 29959.1 Da PI: 9.9227 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim08g065380.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 42.8 | 1.2e-13 | 101 | 145 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT+eE+ +++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
Sopim08g065380.0.1 101 AWTEEEHRIFLVGLEKLGKGDWRGISSNFVTTRTPTQVASHAQKY 145
7*******************************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MGRKCSHCGI TGHNSRTCKT HKDEKIIYDE DPKTIGMMKL FGVKLEVPCS WMKKSFSVDC 60
LSNSSKTSSS MAASKFSYCD ISNGYLSDVG RASSYKKKGV AWTEEEHRIF LVGLEKLGKG 120
DWRGISSNFV TTRTPTQVAS HAQKYFLRQN SLSKKKRRRS LFDKVGMDKS TMLLFDKMVI 180
KTNISCDKSH TQPEDTNISM INFNTTSSSK DSKSSSQQFS NNFTFINSTT FTSHDISVQD 240
SPLPDLELTL AVPTTKSTAL LTGTTITVV*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010894 | 1e-179 | AP010894.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0017M21, complete sequence. |
| GenBank | HG975520 | 1e-179 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
| Publications
? help Back to Top |
- Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10.
Science, 2003. 300(5625): p. 1566-9
[PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Su CF, et al.
A novel MYBS3-dependent pathway confers cold tolerance in rice.
Plant Physiol., 2010. 153(1): p. 145-58
[PMID:20130099]
|
