PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g052490.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 85aa    MW: 9634.7 Da    PI: 4.6562
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g052490.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-083577145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                        ++ ++++E+ l+++ + +   + W++Ia +++ gR + ++  +w 
  Sopim07g052490.0.1 35 KLEFSEDEEMLIAKMFSLVRER-WSLIAGRIP-GRNADEIEKYWK 77
                        678*****************99.*********.***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6233084IPR017930Myb domain
SMARTSM007171.9E-53482IPR001005SANT/Myb domain
PfamPF002493.9E-73677IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-113778IPR009057Homeodomain-like
SuperFamilySSF466893.34E-73781IPR009057Homeodomain-like
CDDcd001676.67E-53777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MADWNRSSTS DNASVVSPDS TRVVALETTN EETSKLEFSE DEEMLIAKMF SLVRERWSLI  60
AGRIPGRNAD EIEKYWKSKY SKSQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755195e-57HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352307.12e-55MYB-like transcription factor ATV
TrEMBLA0A2H5AJN75e-54A0A2H5AJN7_SOLLC; MYB-like transcriptional factor MYBATV-X1 transcript variant 1
STRINGSolyc07g052490.2.12e-54(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.13e-15MYB_related family protein