PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim06g082520.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 846aa MW: 93532.4 Da PI: 6.8849 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.8e-19 | 317 | 416 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ Sopim06g082520.0.1 317 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIFSRID- 405 99**************************666667778***************9989999999***9.********************887. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++lv+++++ Sopim06g082520.0.1 406 PGGKLVMGFRK 416 78878888776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-21 | 314 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-30 | 314 | 419 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.15E-24 | 315 | 416 | No hit | No description |
PROSITE profile | PS50863 | 11.321 | 317 | 418 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-16 | 317 | 416 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 317 | 417 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.086 | 541 | 591 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.0E-11 | 546 | 588 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 846 aa Download sequence Send to blast |
MGSMICMNEL CRATTSVEWK KGWGFKSGGF AKLCYNCGSA FENFVFCETF HPDESGWREC 60 RTCRKPIHCG CIASKYLYEY LDYGGVTCIK CAHHLDGHSI RPIQIPGDDF PIGNLGSKSA 120 KPLGIENKID ENDFERRRFM QTNEPGQLFH TQRNDKKQDP MLPIGNVGTC FSNLNQQNIG 180 ASLFGKPDNE RPSQGVKDMY DSINQPSLNF CLSTPIGTSS SGQPFLGGDV EGREQSKTSP 240 FQQGQRARHI LPKPPKPSPT SGSESVKGMV SQARIARPPA EGRGGRSQLL PRYWPRITDQ 300 ELEQIAGDLK STIVPLFEKV LSASDAGRIG RLVLPKACAE AYFPPINQSE GLPIRIQDIK 360 GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVI FSRIDPGGKL VMGFRKATNN 420 VDMQDPQTPN LPSGNGSGET SFPGMADNFP NGGRTSDDTM NRQVPMSEKK KARNIGSKNR 480 RLLMHADDAM ELRITWEEIQ ELLRPSPTAK PNIVVVEDCE FEEYEEAPVF GKRTIFTARS 540 SGDQEQWAQC DSCSKWRRLP LHILLPAKWT CSDNIWDSRR CSCAAPDEIS PRELEALLRV 600 GKDPKRRKLV ENNEDLESSG LDALATVAAS DMGDSIGDMG EPSVGATTKH PRHRAGCTCI 660 VCIQPPSGKG KHHPTCKCNV CLTVKRRFKT LMLRKKKKQS EREAELAQAK DQVPPKDESE 720 TDGMMSGVEL LQMNHSENEH MNHSDNERNS NGDQVEEFGP GKGQLDLNCH PNRDDDMLAE 780 ATAGMSMTSL VNATNLPLEY LTQNRLESLG NSLLSQAASE SEGHHPDNGF GKTADVESGG 840 KGAKA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-69 | 295 | 424 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 601 | 607 | KDPKRRK |
2 | 684 | 695 | KRRFKTLMLRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC226726 | 0.0 | AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004242480.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_010323114.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_010323115.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_010323116.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_025887548.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Refseq | XP_025887549.1 | 0.0 | B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A3Q7H4D9 | 0.0 | A0A3Q7H4D9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082520.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|