 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim06g075660.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
MYB_related |
| Protein Properties |
Length: 164aa MW: 18988.8 Da PI: 4.7602 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim06g075660.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 2 | 42 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
T++E++l ++++ ++G++ W++Ia +++ gRt++++k++w+++
Sopim06g075660.0.1 2 TPQEELLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTH 42
9*****************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MTPQEELLVL QLHSKYGNRW SKIAGKLPGR TDNEIKNYWR THVRKQAQDE KKNTNKASIS 60
PSSSNCSSSS ANSPVEDFRT ERNELLQVAG ENKIYEGDQN MIVYSMDEIW KEVESTEEIE 120
TKNDLPAMAS NTWDYNYCPD SIWMSTHDHY YFDNHQDFSF FTG*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT013044 | 0.0 | BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence. |
