PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopim06g074920.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB

Protein Properties

Length: 296aa MW: 33873.8 Da PI: 7.8881

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g074920.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + ++++g+ R++k+c++rw++yl Sopim06g074920.0.1 14 KGPWSPEEDAKLKEFIEKYGNGgNWIALPQKVGLMRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	27.2	8.7e-09	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eEd + ++ G++ W+ Ia+ + Rt++++k++w++ Sopim06g074920.0.1 69 GNFSQEEDRVTCSLYARIGSR-WSFIAAQLS-ERTDNNIKNYWNT 111 89*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.525	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	5.43E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	8.47E-10	16	62	No hit	No description
PROSITE profile	PS51294	12.049	67	117	IPR017930	Myb domain
SMART	SM00717	1.3E-5	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-7	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-20	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MKRSPCCDKI NVKKGPWSPE EDAKLKEFIE KYGNGGNWIA LPQKVGLMRC GKSCRLRWLN 60 YLRPNIRHGN FSQEEDRVTC SLYARIGSRW SFIAAQLSER TDNNIKNYWN TKLKKKFIGF 120 IHSSSNILYH PTSTLQTTFQ PQTQSQASIS SIFRDSYIEP IPLVQPNFTY NNNNMMNFQL 180 GTNNQYSYNF HDQSLVYPMQ AISSCSSSDG LSCNQISYGN EEIMCQIPFE ETQKFTLDSY 240 CTTWADHQKA NGYFGNNFQS SQLQYDDHTN IEEIKELISS SSSNGNGCNN VGYWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-23	14	117	7	108	B-MYB
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078574.1	0.0	transcription factor RAX2-like
TrEMBL	A0A3Q7H0Q3	1e-163	A0A3Q7H0Q3_SOLLC; Uncharacterized protein
STRING	Solyc06g074920.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-70	myb domain protein 36