PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g063020.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 465aa    MW: 53665.6 Da    PI: 8.5593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g063020.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.6e-07438460326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +lC+f+a+ G C yG +Ck+ H+
  Sopim06g063020.0.1 438 KKLCHFYAQ-GRCYYGLSCKYLHD 460
                         579******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.4E-889135IPR003034SAP domain
SuperFamilySSF689063.66E-790135No hitNo description
PfamPF020378.5E-10101134IPR003034SAP domain
PROSITE profilePS508009.926101135IPR003034SAP domain
SMARTSM005133.8E-5101135IPR003034SAP domain
PROSITE profilePS5010314.483435462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6435460IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4438460IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5438460IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MDSAEQPYDV SESDSDYDSD DSQDDPTFDL LEETQSSLSK LSIKKQKSMD IMSVRRNVSK  60
ALEDCVEEEK DLEEVVIVPE LDEKDKKSYE TVQKIIKAGQ IEKLKVEQCK VYLRKHGLRL  120
TGTKDTLIQR IKEHTDILNG RGEEKYPPSS FVLNCKGDAC TGDVVMFEQN VYEMFSIASR  180
SATGPPCGTR IVAGRIVKES YGAKKQQHTF TKWDDEAERQ KILSEKHARG SVARSSRETR  240
VQEKEMRKMR RENRVSTDYK EKKTVAEGKG KQLHSRSMNS LNENDQRQVE VVYNSQKDEQ  300
KQFRNYTNVV IQENVYPREN RPEERPNQRQ PLTNVNLNDP SSNREKHNSH MHRHMPMWRG  360
SSYGGNTYYY DIPTWRGYSD GSYNNCNTSR SPLEGHSHMY TGGHGHSQNM NNKSPQRTGN  420
WQARNGKRPI QGQREEQKKL CHFYAQGRCY YGLSCKYLHD SVGI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070069.10.0zinc finger CCCH domain-containing protein 62-like isoform X2
TrEMBLA0A3Q7GY720.0A0A3Q7GY72_SOLLC; Uncharacterized protein
STRINGSolyc06g063020.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA330388