PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g009010.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 179aa MW: 20445.9 Da PI: 5.3951

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g009010.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.5	1.1e-54	31	126	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dyveplk yl+kyre Sopim06g009010.0.1 31 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHNEKRKTLNGDDICWALGSLGFDDYVEPLKRYLHKYRE 121 79*************************************************************************************** PP NF-YB 93 legek 97 lege+ Sopim06g009010.0.1 122 LEGER 126 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-52	30	149	IPR009072	Histone-fold
SuperFamily	SSF47113	6.52E-41	33	151	IPR009072	Histone-fold
Pfam	PF00808	2.8E-27	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.5E-19	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.5E-19	83	101	No hit	No description
PRINTS	PR00615	2.5E-19	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MVDNNINILR SKYDRESSNY NSISEDGLIY KEQDRLLPIA NVGRIMKQIL PPNAKISKEA 60 KETMQECVSE FISFVTGEAS DKCHNEKRKT LNGDDICWAL GSLGFDDYVE PLKRYLHKYR 120 ELEGERINQS KGVGLGNNIE DQRGRDDDEL TQRGSTIPFK ITIMDHKGEN NFLPTRPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-44	31	121	2	92	Transcription factor HapC (Eurofung)
4g92_B	6e-44	31	121	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240535.2	1e-131	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	1e-58	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A3Q7GRX4	1e-129	A0A3Q7GRX4_SOLLC; Uncharacterized protein
STRING	Solyc06g009010.1.1	1e-130	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-61	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]