PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g053240.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 1045aa MW: 115754 Da PI: 7.7695

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g053240.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Sopim05g053240.0.1 149 VCQVQDCRADLSSAKDYHRRHKVCEVHSKAAKALVGNVMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.6E-32	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.043	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-37	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-29	150	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	8.63E-7	774	883	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.5E-6	777	896	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.42E-7	777	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MEARNFHGPV VSNMEVSGKK SREWDSNDWV WDGDRFTAEP LNSLPSDCRS KQLFPIGSEI 60 PETATGIFNG FSSGAGELTL GNDKGRKELE KRRRTIVIDD DDEQNGEAGS LNLKLGEQLY 120 PVMEEEVEKW EGKNGKKTKI SGVSSNRAVC QVQDCRADLS SAKDYHRRHK VCEVHSKAAK 180 ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPENVA NGASVNDEGG 240 SNYLLISLLR ILANVQFNSS DQTKDQDLLS HLLRNLASLA GAANERNASG LLPAPSDLQN 300 PGTSMEAPKE DSLRPNANCL TIPASEVKEK RMDRGTSDAE RGISQNLCAL RPETLCCRKE 360 SLPINANASV TTSAPLKLNI DLNNIYDDSQ GGIQKLQNSD VFVNPGAASS GCPLWISHDP 420 HKSSSTRTSL NSGSTSSLSP SSSSGEAQSR TDRIVFKLFG KDPGEIPTGL RKQVLDWLSH 480 SPTDIESYIR PGCIILTIYL RMDKPIWEEL YSDLNSSLRK LLNASAGSFW RTGWVYSRVK 540 DRVAFLFNGQ VVLDTPLPSH RSCGISIIKP IAVCASERVQ FLVKGFNLSR PTTRFLCAME 600 GKYLVQGNCT DVMVGADSCM DYNEIQSLSF PCTVPNATGR GFIEIEDHGL SSNFFPFIVA 660 EKDVCSEIRT LESIIEAAKM DDGFLRGTEE FQARDQALDF LHELGWLLHR CHLKFRVGSG 720 ASLNLFPFQR FHRLIDFSID HDWCAVVKKL LDVFFNGVVD VGQQSSLDIP LQEVGILHRA 780 VRRKCRSMID VLLKYRHHGA FDKSGLQTQQ DDRGYLFRPD TVGPGGLTPL HVVASLAGYE 840 NILDALIDDP GEVGIEAWKS ARDSTGLTPN DYACLRGHYS YVHMVQKKIN QKPGDGHVVL 900 DIPGSLLDSN LKQKLSDGHR SVKVTSFQTE KSLGKPIHRQ CKQCKQKLSY GNSGTSLVYK 960 PAMLSMVAIA AICVCVALLF KSSPEVLYSF RPFRWELLNT TWIGLATGIV VVDASDLCPI 1020 MLCKISKLLC ILTICTANCL HLWF*

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MEARNFHGPV VSNMEVSGKK SREWDSNDWV WDGDRFTAEP LNSLPSDCRS KQLFPIGSEI  60
PETATGIFNG FSSGAGELTL GNDKGRKELE KRRRTIVIDD DDEQNGEAGS LNLKLGEQLY  120
PVMEEEVEKW EGKNGKKTKI SGVSSNRAVC QVQDCRADLS SAKDYHRRHK VCEVHSKAAK  180
ALVGNVMQRF CQQCSRFHVL EEFDEGKRSC RRRLAGHNKR RRKTHPENVA NGASVNDEGG  240
SNYLLISLLR ILANVQFNSS DQTKDQDLLS HLLRNLASLA GAANERNASG LLPAPSDLQN  300
PGTSMEAPKE DSLRPNANCL TIPASEVKEK RMDRGTSDAE RGISQNLCAL RPETLCCRKE  360
SLPINANASV TTSAPLKLNI DLNNIYDDSQ GGIQKLQNSD VFVNPGAASS GCPLWISHDP  420
HKSSSTRTSL NSGSTSSLSP SSSSGEAQSR TDRIVFKLFG KDPGEIPTGL RKQVLDWLSH  480
SPTDIESYIR PGCIILTIYL RMDKPIWEEL YSDLNSSLRK LLNASAGSFW RTGWVYSRVK  540
DRVAFLFNGQ VVLDTPLPSH RSCGISIIKP IAVCASERVQ FLVKGFNLSR PTTRFLCAME  600
GKYLVQGNCT DVMVGADSCM DYNEIQSLSF PCTVPNATGR GFIEIEDHGL SSNFFPFIVA  660
EKDVCSEIRT LESIIEAAKM DDGFLRGTEE FQARDQALDF LHELGWLLHR CHLKFRVGSG  720
ASLNLFPFQR FHRLIDFSID HDWCAVVKKL LDVFFNGVVD VGQQSSLDIP LQEVGILHRA  780
VRRKCRSMID VLLKYRHHGA FDKSGLQTQQ DDRGYLFRPD TVGPGGLTPL HVVASLAGYE  840
NILDALIDDP GEVGIEAWKS ARDSTGLTPN DYACLRGHYS YVHMVQKKIN QKPGDGHVVL  900
DIPGSLLDSN LKQKLSDGHR SVKVTSFQTE KSLGKPIHRQ CKQCKQKLSY GNSGTSLVYK  960
PAMLSMVAIA AICVCVALLF KSSPEVLYSF RPFRWELLNT TWIGLATGIV VVDASDLCPI  1020
MLCKISKLLC ILTICTANCL HLWF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-30	141	223	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	224	KRRRKTH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004239889.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A3Q7GJX1	0.0	A0A3Q7GJX1_SOLLC; Uncharacterized protein
STRING	Solyc05g053240.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1